Phyre 2 alignment of P23721 with c3a2bA

Job Description P23721
Confidence 99.94% Date Thu Jan 5 11:39:37 GMT 2012

Rank 82 Aligned Residues 329

% Identity 13% Template c3a2bA_

PDB info PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine

Resolution 2.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.					.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.																	.
Query SS confidence														.	.	.	.																	.
Query Sequence	A	Q	I	F	N	F	S	S	G	P	A	M	L	.	.	.	.	P	A	E	V	L	K	Q	A	Q	Q	E	L	R	D	W	N	.	G	L	G	T	S	V	M	E	V	S	H	R	G	K	E	F	I	Q	V	A	E	E	A	E	K	D	F	R	D	L	L	N	V	P	S	N	Y	K	V	L	F	C	H	G	G	G
Query Conservation														.	.	.	.																	.
Alig confidence														.	.	.	.																	.												.	.	.	.	.																				.	.	.	.
Template Conservation																																														.	.	.	.	.																				.	.	.	.
Template Sequence	G	R	R	V	L	M	F	G	S	N	S	Y	L	G	L	T	T	D	T	R	I	I	K	A	A	Q	D	A	L	E	K	Y	G	T	G	C	A	G	S	R	F	L	N	G	T	.	.	.	.	.	L	D	I	H	V	E	L	E	E	K	L	S	A	Y	V	G	K	E	A	.	.	.	.	A	I	L	F	S	T	G
Template Known Secondary structure	T							S		S		T	T		G	G	G																	S				S	B	T	T	T	T			.	.	.	.	.																T		S		.	.	.	.					S	S
Template Predicted Secondary structure																																														.	.	.	.	.																				.	.	.	.
Template SS confidence
	43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.						.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.					.	.	.	110	.	.	.

	77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	G	Q	F	A	A	V	P	L	N	I	L	G	D	K	T	T	A	D	Y	V	D	A	G	Y	W	A	A	S	A	I	K	E	A	K	K	Y	C	T	P	N	V	F	D	A	K	V	T	V	D	G	L	R	A	V	K	P	M	R	E	W	Q	L	S	D	N	A	A	Y	M	H	Y	C	P	N	E	T	I	D	G
Query Conservation
Alig confidence																																.	.															.
Template Conservation																																.	.															.
Template Sequence	F	Q	S	N	L	G	P	L	S	C	L	M	G	R	N	D	Y	I	L	L	D	E	R	D	H	A	S	I	I	D	G	.	.	S	R	L	S	F	S	K	V	I	K	Y	G	H	N	.	N	M	E	D	L	R	A	K	L	S	R	L	P	E	D	S	A	K	L	I	C	T	D	G	I	F	S	M	E	G	D	I
Template Known Secondary structure											S	S		T	T							T	T									.	.				S	S	S							T	T	.											T	S		S	S	S								S	B		T	T	T			B
Template Predicted Secondary structure																																.	.															.
Template SS confidence
	114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190

	157	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.										.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure										.	.																		.	.	.	.	.	.	.	.	.
Query SS confidence										.	.																		.	.	.	.	.	.	.	.	.
Query Sequence	I	A	I	D	E	T	P	D	F	.	.	G	A	D	V	V	V	A	A	D	F	S	S	T	I	L	S	R	.	.	.	.	.	.	.	.	.	P	I	D	V	S	R	Y	G	V	I	Y	A	G	A	Q	K	N	I	G	P	A	G	L	T	I	V	I	V	R	E	D	L	L	G	K	A	N	I	A	C	P	S	I
Query Conservation										.	.																		.	.	.	.	.	.	.	.	.
Alig confidence										.	.																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	V	N	L	P	E	L	T	S	I	A	N	E	F	D	A	A	V	M	V	D	D	A	H	S	L	G	V	I	G	H	K	G	A	G	T	A	S	H	F	G	L	N	D	D	V	D	L	I	M	G	T	F	S	K	S	L	A	S	L	G	G	F	V	A	G	D	A	D	V	I	D	F	L	K	H	N	A	R	S	V
Template Known Secondary structure														T								T	T	T	T	T	T	S	S	G	G	G								T		G	G	G		S						S	S	S	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
	191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

	226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	D	Y	S	I	L	N	D	N	G	S	M	F	N	T	P	P	T	F	A	W	Y	L	S	G	L	V	F	K	W	L	K	A	N	G	G	V	A	E	M	D	K	I	N	Q	Q	K	A	E	L	L	Y	G	V	I	D	N	S	D	F	Y	R	N	D	V	A	K	A	N	R	S	R	M	N	V	P	F	Q	L	A
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.																								.	.																													.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.																								.	.																													.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	M	F	S	A	S	M	T	P	A	S	V	A	S	T	L	K	A	L	E	I	I	Q	N	.	.	E	P	E	H	I	E	K	L	W	K	N	T	D	Y	A	K	A	Q	L	L	D	H	G	F	D	L	G	A	.	.	.	.	.	T	E	S	P	I	L	P	I	F	I	R
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.		S	S	B																				.	.		T																				T	T			B		S	.	.	.	.	.			S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.																								.	.																													.	.	.	.	.
Template SS confidence
												271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.						.	.	.	.	.	.	.	.	330	.	.

	306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.						.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																											.	.	.	.	.
Query SS confidence																											.	.	.	.	.
Query Sequence	D	S	A	L	D	K	L	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	R	V	V	.	.	.	.	.	G	G	M	R	A	S	I	Y	N	A	M	P	L	E	G	V	K	A	L	T	D	F	M	V	E	F	E	R	R
Query Conservation																											.	.	.	.	.
Alig confidence																											.	.	.	.	.
Template Conservation
Template Sequence	S	N	E	K	T	F	W	V	T	K	M	L	Q	D	D	G	V	F	V	N	P	V	V	S	P	A	V	P	A	E	E	S	L	I	R	F	S	L	M	A	T	H	T	Y	D	Q	I	D	E	A	I	E	K	M	V	K	V	F	K	Q
Template Known Secondary structure															T	T								T	T	T	S		G	G	G									T	T
Template Predicted Secondary structure
Template SS confidence
	333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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