Job Description P23721 Confidence 99.75% Date Thu Jan 5 11:39:37 GMT 2012 Rank 211 Aligned Residues 303 % Identity 13% Template c2zy3A_ PDB info PDB header:lyase Chain: A: PDB Molecule:l-aspartate beta-decarboxylase; PDBTitle: dodecameric l-aspartate beta-decarboxylase Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		51	.	.	.	.	.	.	.	.	60	.				.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.						.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure													.	.	.																											.	.	.	.	.
Query SS confidence													.	.	.																											.	.	.	.	.
Query Sequence		E	E	A	E	K	D	F	R	D	L	L	.	.	.	N	V	P	S	N	Y	K	V	L	F	C	H	G	G	G	R	G	Q	F	A	A	V	P	L	N	I	.	.	.	.	.	L	G	D	K	T	T	A	D	Y	V	D	A	G	Y	W	A	A	S	A	I	K	E	A	K	K	Y	C	T	P	N	V	F	D	A	K
Query Conservation													.	.	.																											.	.	.	.	.
Alig confidence													.	.	.																											.	.	.	.	.
Template Conservation
Template Sequence		K	I	V	R	Q	Y	I	I	R	E	M	G	A	D	A	I	P	S	E	S	V	N	L	F	A	V	E	G	G	T	A	A	M	A	Y	I	F	E	S	L	K	L	N	G	L	L	K	A	G	D	K	V	A	I	G	M	P	V	F	T	P	Y	I	E	I	P	E	L	A	Q	Y	A	L	E	E	V	A	I	N	A
Template Known Secondary structure												T	T		T	T	S		G	G	G							S																T	T	S	S		T	T								S			T					S	T	T	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		123	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.						.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.						.	.	.	.	.	.
Predicted Secondary structure							.	.																																							.	.	.	.	.				.	.															.	.	.	.	.
Query SS confidence							.	.																																							.	.	.	.	.				.	.															.	.	.	.	.
Query Sequence		V	T	V	D	G	.	.	L	R	A	V	K	P	M	R	E	W	Q	L	S	D	N	A	A	Y	M	H	Y	C	P	N	E	T	I	D	G	I	A	I	D	E	T	P	D	F	.	.	.	.	.	G	A	D	.	.	V	V	V	A	A	D	F	S	S	T	I	L	S	R	.	.	.	.	.	P	I	D	V	S	R
Query Conservation							.	.																																							.	.	.	.	.				.	.															.	.	.	.	.
Alig confidence							.	.																																							.	.	.	.	.				.	.															.	.	.	.	.
Template Conservation
Template Sequence		D	P	S	L	N	W	Q	Y	P	D	S	E	L	D	K	L	K	D	P	A	I	K	I	F	F	C	V	N	P	S	N	P	P	S	V	K	M	D	Q	R	S	L	E	R	V	R	N	I	V	A	E	H	R	P	D	L	M	I	L	T	D	D	V	Y	G	T	F	A	D	D	F	Q	S	L	F	A	I	C	P	E
Template Known Secondary structure		B	G	G	G	T	S	B							G	G	G	G		T	T								S	S		S	S	S		B																	T		T	T								T	T	G	G	G	S	S	S									G	G
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																		.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	G	V	I	Y	A	G	A	Q	K	N	I	G	P	A	G	.	.	L	T	I	V	I	V	R	E	D	L	L	G	K	A	N	I	A	C	P	S	I	L	D	Y	S	I	L	N	D	N	G	S	M	F	N	T	P	P	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																		.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	T	L	L	V	Y	S	F	S	K	Y	F	G	A	T	G	W	R	L	G	V	V	A	A	H	Q	Q	N	V	F	D	L	A	L	D	K	L	Q	E	S	E	K	V	A	L	D	H	R	Y	R	S	L	L	P	D	V	R	S	L	K	F	I	D	R	L	V	A	D	S	R	A	V	A	L	N	H	T	A	G	L
Template Known Secondary structure		G							S	T	T	T	T	T		G	G	G									S	S									S	S												T	T	T	T		S		G	G	G											T	T	T	T	T	T	G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
									244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	F	A	W	Y	L	S	G	L	V	F	K	W	L	K	A	N	G	G	V	A	E	M	D	K	I	N	Q	Q	K	A	E	L	L	Y	G	V	I	D	N	S	D	F	Y	R	N	D	V	A	K	A	N	R	S	R	M	N	V	P	F	Q	L	A	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																	.	.																									.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.																									.	.	.	.	.
Template Sequence		S	T	P	Q	Q	V	Q	M	A	L	F	S	L	F	A	L	M	D	E	A	D	E	Y	.	.	K	H	T	L	K	Q	L	I	R	R	R	E	T	T	L	Y	R	E	L	G	M	P	P	L	.	.	.	.	.	R	D	E	N	A	V	D	Y	Y	T	L	I	D	L	Q	D	V	T	A	K	L	Y	G	E	A	F
Template Known Secondary structure																				T	T				.	.																T	T	T	T	T	S				.	.	.	.	.			T	T	B			S
Template Predicted Secondary structure																									.	.																									.	.	.	.	.
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.			.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.						.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
								306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.				.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure		.	.	.	.	.	.																											.	.	.
Query SS confidence		.	.	.	.	.	.																											.	.	.
Query Sequence		.	.	.	.	.	.	D	S	A	L	D	K	L	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	R	V	V	.	.	.	G	G	M	R	A	S	I	Y	N	A	M	P	L	E	G	V	K	A	L	T	D	F	M	V	E	F	E	R	R	H
Query Conservation		.	.	.	.	.	.																											.	.	.
Alig confidence		.	.	.	.	.	.																											.	.	.												.
Template Conservation																																																.
Template Sequence		S	E	W	A	V	K	Q	S	S	T	G	D	M	L	F	R	I	A	D	E	T	G	I	V	L	L	P	G	R	G	F	G	S	N	R	P	S	G	R	A	S	L	A	N	L	N	.	E	Y	E	Y	A	A	I	G	R	A	L	R	K	M	A	D	E	L
Template Known Secondary structure																							S								S	S		T	T	S							S	S	S	S		.
Template Predicted Secondary structure																																																.
Template SS confidence
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.		.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions