Job Description P23721 Confidence 99.71% Date Thu Jan 5 11:39:37 GMT 2012 Rank 219 Aligned Residues 326 % Identity 12% Template c2zsmA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-2 aminomutase from aeropyrum pernix, hexagonal form Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10			.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure											.	.					.	.	.
Query SS confidence											.	.					.	.	.
Query Sequence		A	Q	I	F	N	F	S	S	G	.	.	P	A	M	L	.	.	.	P	A	E	V	L	K	Q	A	Q	Q	E	L	R	D	W	N	G	L	G	T	S	V	M	E	V	S	H	R	G	K	E	F	I	Q	V	A	E	E	A	E	K	D	F	R	D	L	L	N	V	P	S	N	Y	K	V	L	F	C	H	G	G	G
Query Conservation											.	.					.	.	.
Alig confidence											.	.					.	.	.																							.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Sequence		A	R	I	V	D	L	V	L	A	Y	G	P	L	I	L	G	H	K	H	P	R	V	L	E	A	V	E	E	A	L	A	R	G	W	L	Y	G	A	P	G	.	.	.	.	.	.	.	.	.	.	.	E	A	E	V	L	L	A	E	K	I	L	G	Y	V	K	R	G	G	M	.	.	.	I	R	F	V	N	S	G
Template Known Secondary structure							S	S	G	G	G	T	T		T	T		B	S													T	T		S			S	S			.	.	.	.	.	.	.	.	.	.	.	S															T	T			.	.	.					S	S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.												.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.
		77	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.													.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure											.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	G	Q	F	A	A	V	P	L	.	.	N	I	L	G	D	K	T	T	A	D	Y	V	D	A	G	Y	W	A	A	S	A	I	K	E	A	K	K	Y	C	T	P	N	V	.	.	.	.	.	.	.	.	.	.	.	.	F	D	A	K	V	T	V	D	G	L	R	A	V	K	P	M	R	E	W	Q	L	S	D	N
Query Conservation											.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.																							.	.										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.
Template Sequence		T	E	A	T	M	T	A	I	R	L	A	R	G	Y	T	G	R	D	L	I	L	K	F	D	G	C	Y	H	G	S	H	D	A	.	.	V	L	V	A	A	G	G	V	P	T	S	A	G	V	P	E	A	V	A	R	L	T	L	V	T	P	Y	N	D	V	E	A	L	E	R	V	F	A	E	Y	G	D	R	I	A
Template Known Secondary structure																										T					S	S	G	G	.	.	G	S								S	S	T	T							T	T						T	T													G	G	G
Template Predicted Secondary structure																																			.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.					.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.				.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																		.	.	.	.								.	.																		.	.										.	.	.
Query SS confidence																		.	.	.	.								.	.																		.	.										.	.	.
Query Sequence		A	A	Y	M	H	Y	C	P	N	E	T	I	D	G	I	A	.	.	.	.	I	D	E	T	P	D	F	.	.	G	A	D	V	V	V	A	A	D	F	S	S	T	I	L	S	R	.	.	P	I	D	V	S	R	Y	G	V	.	.	.	I	Y	A	G	A	Q	K	N	I	G	P	A	G	L	T	I	V	I	V	R
Query Conservation																		.	.	.	.								.	.																		.	.										.	.	.
Alig confidence																		.	.	.	.								.	.																		.	.										.	.	.
Template Conservation
Template Sequence		G	V	I	V	E	P	V	I	A	N	A	G	V	I	P	P	R	R	E	F	L	A	A	L	Q	R	L	S	R	E	S	G	A	L	L	I	L	D	E	V	V	T	G	F	R	L	G	L	E	G	A	Q	G	Y	F	N	I	E	G	D	I	I	V	L	G	K	I	I	G	G	G	F	P	V	G	A	V	A	G	S
Template Known Secondary structure							S	S	B		S	S	S		B																		T								T	T	T	T	T	T	S	S	T	T							T				S						G	G	G	G	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	L	L	G	K	A	N	I	A	C	P	S	I	L	D	Y	S	I	L	N	D	N	G	S	M	F	N	T	P	P	T	F	A	W	Y	L	S	G	L	V	F	K	W	L	K	A	N	G	G	V	A	E	M	D	K	I	N	Q	Q	K	A	E	L	L	Y	G	V	I	D	N	S	D	F	Y	R	N	D	V	A
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.																																																		.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.																																																		.	.	.	.
Template Sequence		R	E	V	M	S	L	L	T	P	Q	G	K	V	F	N	A	.	.	.	.	.	.	.	.	.	G	T	F	N	A	H	P	I	T	M	A	A	G	L	A	T	L	K	A	L	E	E	E	P	V	Y	S	V	S	R	E	A	A	K	A	L	E	E	A	A	S	E	V	L	D	R	T	G	L	.	.	.	.	P	Y
Template Known Secondary structure						T	T	B	T	T	T	S	S	B				.	.	.	.	.	.	.	.	.		T	T	T	T																		S																						T	T	S	S		.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.																																																		.	.	.	.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.										.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350					.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.														.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	A	N	R	S	R	M	N	V	P	F	Q	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	A	L	D	K	L	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	R	V	V	G	G	M	R	A	S	I	Y	N	A	M	P	L	E	G	V	K	A	L	T	D	F	M	V	E	F	E
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation																																																					.	.	.	.
Template Sequence		T	I	N	R	V	E	S	M	M	Q	L	F	I	G	V	E	E	V	S	N	A	A	Q	A	R	K	A	D	K	K	F	Y	V	K	L	H	E	E	M	L	R	R	G	V	F	I	A	P	S	N	L	.	.	.	.	E	A	V	F	T	G	L	P	H	Q	G	E	A	L	E	I	A	V	E	G	L	R	S	S	L
Template Known Secondary structure							T	T							T		S			S	S					T	T	S															T	T					S	S	T	T	.	.	.	.	S						T	T		S
Template Predicted Secondary structure																																																					.	.	.	.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.					.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		359	360
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		429	430

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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