Job Description P23721 Confidence 99.81% Date Thu Jan 5 11:39:37 GMT 2012 Rank 185 Aligned Residues 339 % Identity 12% Template c2x5fB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate_tyrosine_phenylalanine pyridoxal-5' PDBTitle: crystal structure of the methicillin-resistant2 staphylococcus aureus sar2028, an3 aspartate_tyrosine_phenylalanine pyridoxal-5'-phosphate4 dependent aminotransferase Resolution 1.80 Å

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		2	.	.	.	.	.	.	.	10						.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure											.	.	.	.	.																																																				.	.
Query SS confidence											.	.	.	.	.																																																				.	.
Query Sequence		A	Q	I	F	N	F	S	S	G	.	.	.	.	.	P	A	M	L	P	A	E	V	L	K	Q	A	Q	Q	E	L	R	D	W	N	G	L	G	T	S	V	M	E	V	S	H	R	G	K	E	F	I	Q	V	A	E	E	A	E	K	D	F	R	D	L	L	.	.	N	V	P	S	N	Y	K	V	L	F	C	H	G
Query Conservation											.	.	.	.	.																																																				.	.
Alig confidence											.	.	.	.	.																													.			.	.	.	.	.																.	.
Template Conservation																																												.			.	.	.	.	.
Template Sequence		S	T	T	Y	N	A	T	I	G	M	A	T	N	K	D	G	K	M	F	A	S	S	L	D	A	M	F	N	D	L	T	P	D	E	I	F	P	Y	A	P	P	Q	.	G	I	.	.	.	.	.	E	E	L	R	D	L	W	Q	Q	K	M	L	R	D	N	P	E	L	S	I	D	N	M	S	R	P	I	V	T	N
Template Known Secondary structure		T	S	S	S					S	S				T	T										T	T		S	S			G	G	G	T	S	S				T	T	.			.	.	.	.	.																T	T			G	G	G	B							S
Template Predicted Secondary structure																																												.			.	.	.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.						.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																																																						.	.	.
Query SS confidence																																																																						.	.	.
Query Sequence		G	G	R	G	Q	F	A	A	V	P	L	N	I	L	G	D	K	T	T	A	D	Y	V	D	A	G	Y	W	A	A	S	A	I	K	E	A	K	K	Y	C	T	P	N	V	F	D	A	K	V	T	V	D	G	L	R	A	V	K	P	M	R	E	W	Q	L	S	D	N	.	.	.	A	A	Y	M	H	Y	C	P	N
Query Conservation																																																																						.	.	.
Alig confidence																																																																						.	.	.
Template Conservation
Template Sequence		A	L	T	H	G	L	S	L	V	G	D	L	F	V	N	Q	D	D	T	I	L	L	P	E	H	N	W	G	N	Y	K	L	V	F	N	T	R	N	G	A	N	L	Q	T	Y	P	I	F	D	K	D	G	H	Y	T	T	D	S	L	V	E	A	L	Q	S	Y	N	K	D	K	V	I	M	I	L	N	Y	P	N	N
Template Known Secondary structure																	T	T							S	S			T							T	T	T	T										B		T	T	S		B		S												S	S								S	S		T
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.											.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.															190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		E	T	I	D	G	I	A	I	D	E	T	P	D	F	G	.	.	.	.	.	.	.	.	.	.	A	D	V	V	V	A	A	D	F	S	S	T	I	L	S	R	P	I	D	V	S	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	I	Y	A	G	A	Q	K	N	I	G	P	A	G	.	.	L
Query Conservation																	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		P	T	G	Y	T	P	T	H	K	E	V	T	T	I	V	E	A	I	K	A	L	A	N	K	G	T	K	V	I	A	V	V	D	D	A	Y	Y	G	L	F	Y	E	D	V	Y	T	Q	S	L	F	T	A	L	T	N	L	H	S	N	A	I	L	P	I	R	L	D	G	A	T	K	E	F	F	A	W	G	F	R	V
Template Known Secondary structure		T	T																						T	T										T	T	T	T		B		S	S				S								T	T			T	T													T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.								.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.
Query Sequence		T	I	V	I	V	R	E	D	L	L	G	K	A	N	I	A	C	P	S	I	L	D	Y	S	I	L	N	D	N	G	S	M	F	N	T	P	P	T	F	A	W	Y	L	S	G	L	V	F	K	.	.	.	.	.	.	.	W	L	K	A	N	G	G	V	A	E	M	D	K	I	N	Q	Q	K	A	E	L	L	Y	G
Query Conservation																																																			.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.																														.	.	.	.	.	.	.						.	.
Template Conservation																	.	.	.	.	.																																										.	.
Template Sequence		G	F	M	T	F	G	T	S	D	Q	T	T	K	E	V	.	.	.	.	.	L	E	A	K	V	K	G	L	I	R	S	N	I	S	S	G	P	L	P	T	Q	S	A	V	K	H	V	L	K	N	N	K	Q	F	D	K	E	I	E	Q	N	.	.	I	Q	T	L	K	E	R	Y	E	V	T	K	E	V	V	Y	A
Template Known Secondary structure							B										.	.	.	.	.											T	T	T	S	S													T	T	T												.	.																T
Template Predicted Secondary structure																	.	.	.	.	.																																										.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.						.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	D	N	S	D	F	Y	R	N	D	V	A	K	A	N	R	S	R	M	N	V	P	F	Q	L	A	D	S	A	L	D	K	L	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	R	V	V	G	G	M	R	A	S	I	Y	N	A	M	P	L	E	G	V	K	A	L	T	D	F	M	V	E	F	E
Query Conservation
Alig confidence															.	.	.	.																																				.	.										.
Template Conservation															.	.	.	.																																				.	.										.
Template Sequence		D	Q	Y	H	S	H	W	Q	A	Y	D	F	N	.	.	.	.	S	G	Y	F	M	A	I	K	V	H	D	V	D	P	E	A	L	R	K	H	L	I	D	K	Y	S	I	G	V	I	A	L	N	A	T	.	.	D	I	R	I	A	F	S	C	V	.	E	K	D	D	I	P	H	V	F	D	S	I	A	K	A	I
Template Known Secondary structure		G	G	G	T	T	T								.	.	.	.	B	S	S							S	S	S													T								S	S	S	.	.						G	G	G	S	.		G	G	G
Template Predicted Secondary structure															.	.	.	.																																				.	.										.
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.					.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.			400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
		359	360
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		425	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions