Job Description P23721 Confidence 99.76% Date Thu Jan 5 11:39:37 GMT 2012 Rank 209 Aligned Residues 293 % Identity 11% Template c2vycA_ PDB info PDB header:lyase Chain: A: PDB Molecule:biodegradative arginine decarboxylase; PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli Resolution 2.4 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		V	A	E	E	A	E	K	D	F	R	D	L	L	N	V	P	S	N	Y	K	V	L	F	C	H	G	G	G	R	G	Q	F	A	A	V	P	L	N	I	L	G	D	K	T	T	A	D	Y	V	D	A	G	Y	W	A	A	S	A	I	K	E	A	K	K	Y	C	T	P	N	V	F	D	A	K	V	T	V	D	.	.
Query Conservation																																																																																.	.
Alig confidence																	.	.	.																																										.	.																		.	.
Template Conservation																	.	.	.																																										.	.
Template Sequence		A	F	G	E	S	E	K	Y	A	A	R	V	F	G	A	.	.	.	D	R	S	W	S	V	V	V	G	T	S	G	S	N	R	T	I	M	Q	A	C	M	T	D	N	D	V	V	V	V	D	R	N	C	H	K	S	I	E	Q	G	.	.	L	M	L	T	G	A	K	P	V	Y	M	V	P	S	R	N	R	Y	G
Template Known Secondary structure															T		.	.	.	S						S	S																T	T							S	S									.	.															B		T	T	S
Template Predicted Secondary structure																	.	.	.																																										.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220				.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
										127	.	.	130	.	.	.	.	.	.	.	.	.	140	.									.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.										.																		.	.													.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.										.																		.	.													.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	G	L	R	A	V	K	P	M	R	E	W	Q	L	S	D	.	.	.	.	.	.	.	.	N	A	A	Y	M	H	Y	C	P	.	N	E	T	I	D	G	I	A	I	D	E	T	P	D	F	G	A	.	.	D	V	V	V	A	A	D	F	S	S	T	I	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.										.																		.	.													.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.										.																		.	.													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	I	G	P	I	Y	P	Q	E	M	Q	P	E	T	L	Q	K	K	I	S	E	S	P	L	T	K	D	K	A	G	Q	K	P	S	Y	C	V	V	T	N	C	T	Y	D	G	V	C	Y	N	A	K	E	A	Q	D	L	L	E	K	T	S	D	R	L	H	F	D	E	A	W	Y	G	Y	A	R	F	N	P	I	Y
Template Known Secondary structure			B					G	G	G	G	S												T	T	T	G	G	G	T	T				S						S	S		T	T	S													T	T	T		S							T	T		T	T	G	G	G		G	G	G
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
			180	.	.	.	.	.	.	.	.	.	190							.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.					.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure		.												.	.	.	.	.	.																									.	.	.	.
Query SS confidence		.												.	.	.	.	.	.																									.	.	.	.
Query Sequence		.	L	S	R	P	I	D	V	S	R	Y	G	.	.	.	.	.	.	V	I	Y	A	G	A	Q	K	N	I	G	P	A	G	L	T	I	V	I	V	R	E	D	L	.	.	.	.	L	G	K	A	N	I	A	C	P	S	I	L	D	Y	S	I	L	N	D	N	G	S	M	F	N	T	P	P	T	F	A	W	Y	L
Query Conservation		.												.	.	.	.	.	.																									.	.	.	.
Alig confidence		.												.	.	.	.	.	.																									.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	H	Y	A	M	R	G	E	P	G	D	H	N	G	P	T	V	F	A	T	H	S	T	H	L	L	N	A	L	S	Q	A	S	Y	I	H	V	R	E	G	R	G	A	I	N	F	S	R	F	N	Q	A	Y	M	M	H	.	.	.	.	.	.	.	.	.	.	.	A	T	T	S	P	L	Y	A	I	C	A	S
Template Known Secondary structure		T	T	S	S	S	S		S						S	S	B												S			T	T										B	T														T	.	.	.	.	.	.	.	.	.	.	.	S		S	S
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.												.	.	420	.	.	.	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.										.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	L	V	F	K	W	L	K	A	N	G	G	V	A	E	M	D	K	I	N	Q	Q	K	A	E	L	L	Y	G	V	I	D	N	S	D	.	.	.	.	.	.	.	.	.	F	Y	R	N	D	V	A	K	A	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																						.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																							.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.
Template Sequence		N	D	V	A	V	S	M	M	D	G	N	S	G	.	L	S	L	T	Q	E	V	I	D	E	A	V	D	F	R	Q	A	M	A	R	L	Y	K	E	F	T	A	D	G	S	W	F	F	K	P	W	N	K	E	V	V	T	D	P	Q	T	G	K	T	Y	D	F	A	D	A	P	T	K	L	L	T	T	V	Q	D	C
Template Known Secondary structure										S	T				.																											T	T	T							S	S		S					T	T	T						G	G	G	S									G	G	G
Template Predicted Secondary structure															.
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.		.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.
																								296	.	.	.	300	.	.	.	.	.	.	.	.											.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	M	N	V	P	F	Q	L	A	D	S	A	.	.	.	.	.	.	.	.	.	.	L	D	K	L	F	L	E	E	S	F	A	A	G	L	H	A	.	L	K	G	H	R	V	V	G	G	M	R	A	S	I	Y	N	A	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																	.							.	.	.
Template Conservation																																																																						.	.	.
Template Sequence		W	V	M	H	P	G	E	S	W	H	G	F	K	D	I	P	D	N	W	S	M	L	D	P	I	K	V	S	I	L	A	P	G	M	G	E	D	G	E	L	E	E	T	G	V	P	A	A	L	V	T	A	W	L	G	R	H	G	I	V	P	T	R	T	T	D	F	Q	.	.	.	I	M	F	L	F	S	M	G	V
Template Known Secondary structure		T	B			T	T		T	T	T			T	T			T	T	S					T	T							S		B		T	T	S	S	B		S	S													T	T	T				S				S	S		.	.	.							T	T
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
		510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.				.	.	580	.	.	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	E	G	V	K	A	L	T	D	F	M	V	E	F	E	R	R	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	R	G	K	W	G	T	L	V	N	T	L	C	S	F	K	R	H	Y
Template Known Secondary structure			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		587	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions