Job Description P23721 Confidence 99.95% Date Thu Jan 5 11:39:37 GMT 2012 Rank 65 Aligned Residues 317 % Identity 13% Template c2qmaB_ PDB info PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus Resolution 1.81 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		P	A	M	L	P	A	E	V	L	K	Q	A	Q	Q	E	L	R	D	W	N	G	L	G	T	S	V	M	E	V	S	H	R	G	K	E	F	I	Q	V	A	E	E	A	E	K	D	F	R	D	L	L	N	V	P	S	N	Y	K	V	L	F	C	H	G	G	G	R	G	Q	F	A	A	V	P	L	N	I	L	.	.
Query Conservation																																																																																.	.
Alig confidence																												.	.	.	.	.	.																																															.	.
Template Conservation																												.	.	.	.	.	.
Template Sequence		T	P	P	L	X	P	A	V	A	A	E	A	X	I	A	A	L	N	Q	S	X	D	S	W	D	Q	.	.	.	.	.	.	A	S	S	A	T	Y	V	E	Q	K	V	V	N	W	L	C	D	K	Y	D	L	S	E	K	A	D	G	I	F	T	S	G	G	T	Q	S	N	Q	X	G	L	X	L	A	R	D	W	I
Template Known Secondary structure																						T	T		G	G	G	.	.	.	.	.	.																			T	T			T	T							S	S
Template Predicted Secondary structure																												.	.	.	.	.	.
Template SS confidence
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.							.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
																			89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.				.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.							.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.																											.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.																											.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	K	T	T	A	D	Y	V	D	A	G	Y	W	A	A	S	A	I	K	E	A	K	K	Y	C	T	.	.	.	P	N	V	F	D	A	K	V	T	V	D	G	L	R	A	V	K	P	M	R	E	W	Q	L	S	D	.	.	.	.	.	.	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.																											.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.											.	.	.																											.	.	.	.	.	.
Template Conservation																																		.	.
Template Sequence		A	D	K	L	S	G	H	S	I	Q	K	L	G	L	P	D	Y	A	D	K	L	R	I	V	C	S	K	K	S	H	F	T	.	.	V	Q	K	S	A	S	W	X	G	L	G	E	K	A	V	X	T	V	D	A	N	A	D	G	T	X	D	I	T	K	L	D	E	V	I	A	Q	A	K	A	E	G	L	I	P	F
Template Known Secondary structure															S		T	T	G	G	G							T	T	S		T		.	.								T	T	S		G	G	G						B		T	T	S		B															T	T
Template Predicted Secondary structure																																		.	.
Template SS confidence
		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.			.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.								190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																									.	.																									.	.	.	.	.	.	.													.
Query SS confidence																									.	.																									.	.	.	.	.	.	.													.
Query Sequence		A	A	Y	M	H	Y	C	P	N	E	T	I	D	G	I	A	I	D	E	T	P	D	F	.	.	G	A	D	V	V	V	A	A	D	F	S	S	T	I	L	S	R	P	I	D	V	S	R	Y	.	.	.	.	.	.	.	G	V	I	Y	A	G	A	Q	K	N	I	G	.	P	A	G	L	T	I	V	I	V	R	E
Query Conservation																									.	.																									.	.	.	.	.	.	.													.
Alig confidence																									.	.																									.	.	.	.	.	.	.													.
Template Conservation
Template Sequence		A	I	V	G	T	A	G	T	T	D	H	G	A	I	D	D	L	D	F	I	A	D	X	A	V	K	H	D	X	W	X	H	V	D	G	A	Y	G	G	A	L	I	L	S	S	H	K	S	R	L	K	G	V	E	R	A	H	S	I	S	V	D	F	H	K	L	F	Y	Q	T	I	S	C	G	A	L	L	V	N	D
Template Known Secondary structure							B	S		T	T	T			B														T								T	T	G	G	G	G	G	G	S	T	T	G	G	G	G	T	T	G	G	G		S						T	T	S	T	T				S	S							S
Template Predicted Secondary structure
Template SS confidence
		722	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	L	G	K	A	N	I	A	C	P	S	I	L	D	Y	S	I	L	N	D	N	G	S	M	F	N	T	P	P	T	F	A	W	Y	L	S	G	L	V	F	K	W	L	K	A	N	G	G	V	A	E	M	D	K	I	N	Q	Q	K	A	E	L	L	Y	G	V	I	D	N	S	D	F	Y	R	N	D	V	A	K
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Sequence		K	S	N	F	K	F	L	L	K	R	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	K	V	F	X	T	X	Q	N	V	G	P	K	.	A	L	G	D	X	Y	D	H	L	L	A	Q	T	L	E	V	A	D	X	I	R	T	N	D	Q	F	E	L	L	A	E	P
Template Known Secondary structure		G	G	G	G	G	G	G					T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T				.																						T		T	T					S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template SS confidence
		802	.	.	.	.	.	.	.	810	.	.	.																						.	.	.	.	.	.	820	.	.	.	.	.	.	.		.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310						.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.			.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																				.	.	.	.	.																							.	.								.
Query SS confidence																				.	.	.	.	.																							.	.								.
Query Sequence		A	N	R	S	R	M	N	V	P	F	Q	L	A	D	S	A	L	D	.	.	.	.	.	K	L	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	R	V	V	G	.	.	G	M	R	A	S	I	Y	.	N	A	M	P	L	E	G	V	K	A	L	T	D	F	M	V	E	F	E	R	R
Query Conservation																				.	.	.	.	.																							.	.								.
Alig confidence				.	.	.														.	.	.	.	.																							.	.								.
Template Conservation				.	.	.
Template Sequence		S	L	.	.	.	S	T	V	L	F	R	A	T	H	E	T	A	D	L	D	E	L	N	K	A	L	R	L	E	A	L	T	R	G	I	A	V	L	G	E	T	I	V	D	G	K	T	A	L	K	F	T	I	L	N	P	C	L	T	T	S	D	F	E	S	L	L	S	K	I	N	X	L	A	V	E
Template Known Secondary structure		S	S	.	.	.	S									S	S	S																	T	S		B							T	T											T	T
Template Predicted Secondary structure				.	.	.
Template SS confidence
		884	.				.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions