Job Description P23721 Confidence 99.91% Date Thu Jan 5 11:39:37 GMT 2012 Rank 113 Aligned Residues 323 % Identity 15% Template c2o0rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase); PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.
Predicted Secondary structure											.	.																			.	.	.	.																																				.	.	.
Query SS confidence											.	.																			.	.	.	.																																				.	.	.
Query Sequence		A	Q	I	F	N	F	S	S	G	.	.	P	A	M	L	P	A	E	V	L	K	Q	A	Q	Q	E	L	R	D	.	.	.	.	W	N	G	L	G	T	S	V	M	E	V	S	H	R	G	K	E	F	I	Q	V	A	E	E	A	E	K	D	F	R	D	L	L	N	V	.	.	.	P	S	N	Y	K	V	L	F	C
Query Conservation											.	.																			.	.	.	.																																				.	.	.
Alig confidence											.	.																			.	.	.	.								.	.	.	.	.	.	.	.	.	.	.																		.	.	.					.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Sequence		I	G	A	V	N	L	G	Q	G	F	P	D	E	D	G	P	P	K	M	L	Q	A	A	Q	D	A	I	A	G	G	V	N	Q	Y	P	P	G	P	G	S	.	.	.	.	.	.	.	.	.	.	.	A	P	L	R	R	A	I	A	A	Q	R	R	R	H	F	G	V	D	Y	D	P	E	T	E	.	.	V	L	V
Template Known Secondary structure		T	T				S	S		S	S		S	S																T	T			S				T	T			.	.	.	.	.	.	.	.	.	.	.																					T	T	T	S	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.																									.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.												.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence		H	G	G	G	R	G	Q	F	A	A	V	P	L	N	I	L	G	D	K	T	T	A	D	Y	V	D	A	G	Y	W	A	A	S	A	I	K	E	A	K	K	Y	C	T	P	N	V	F	D	A	K	V	T	V	D	G	.	.	.	L	R	A	V	K	P	M	R	E	W	Q	L	S	D	N	A	A	Y	M	H	Y	C
Query Conservation																																																									.	.	.
Alig confidence																																					.	.																			.	.	.
Template Conservation																																					.	.
Template Sequence		T	V	G	A	T	E	A	I	A	A	A	V	L	G	L	V	E	P	G	S	E	V	L	L	I	E	P	F	Y	D	S	Y	S	P	V	.	.	V	A	M	A	G	A	H	R	V	T	V	P	L	V	P	D	G	R	G	F	A	L	D	A	D	A	L	R	R	A	V	T	P	R	T	R	A	L	I	I	N	S	P
Template Known Secondary structure																			T	T								S			T	T					.	.				T	T												T	T															T	T								S	S
Template Predicted Secondary structure																																					.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.										.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.
Predicted Secondary structure																		.	.	.	.	.																	.	.	.	.	.	.	.	.	.																								.	.
Query SS confidence																		.	.	.	.	.																	.	.	.	.	.	.	.	.	.																								.	.
Query Sequence		P	N	E	T	I	D	G	I	A	I	D	E	T	P	D	F	.	.	.	.	.	G	A	D	V	V	V	A	A	D	F	S	S	T	I	L	S	.	.	.	.	.	.	.	.	.	R	P	I	D	V	S	R	Y	G	V	I	Y	A	G	A	Q	K	N	I	G	P	A	G	.	.	L	T	I	V	I	V	R	E	D
Query Conservation																		.	.	.	.	.																	.	.	.	.	.	.	.	.	.																								.	.
Alig confidence																		.	.	.	.	.																	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation
Template Sequence		H	N	P	T	G	A	V	L	S	A	T	E	L	A	A	I	A	E	I	A	V	A	A	N	L	V	V	I	T	D	E	V	Y	E	H	L	V	F	D	H	A	R	H	L	P	L	A	G	F	D	G	M	A	E	R	T	I	T	I	S	S	A	A	M	F	N	C	T	G	W	K	I	G	W	A	C	G	P	A	E
Template Known Secondary structure			T	T	T																			T	T								T	T	T	T		B		T	T						G	G	G	S	T	T	T	G	G	G											S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	G	K	A	N	I	A	C	P	S	I	L	D	Y	S	I	L	N	D	N	G	S	M	F	N	T	P	P	T	F	A	W	Y	L	S	G	L	V	F	K	W	L	K	A	N	G	G	V	A	E	M	D	K	I	N	Q	Q	K	A	E	L	L	Y	G	V	I	D	N	S	D	F	Y	R	N	D	V	A	K	A
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.																								.	.																															.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.																								.	.																															.	.
Template Sequence		L	I	A	G	V	R	A	A	K	Q	Y	.	.	.	.	.	.	.	.	.	.	.	.	L	S	Y	V	G	G	A	P	F	Q	P	A	V	A	L	A	L	D	T	E	D	A	W	.	.	V	A	A	L	R	N	S	L	R	A	R	R	D	R	L	A	A	G	L	T	E	I	G	F	A	V	H	D	S	Y	.	.
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.		T	S				T	T																.	.																							T								.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.																								.	.																															.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260													.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.			.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.				.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330								.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.																									.	.	.	.	.	.	.
Query SS confidence															.	.	.																									.	.	.	.	.	.	.
Query Sequence		N	R	S	R	M	N	V	P	F	Q	L	A	D	.	.	.	S	A	L	D	K	L	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	R	V	.	.	.	.	.	.	.	V	G	G	M	R	A	S	I	Y	N	A	M	P	L	E	G	V	K	A	L	T	D	F	M	V	E	F	E	R
Query Conservation															.	.	.																									.	.	.	.	.	.	.
Alig confidence		.	.												.	.	.																									.	.	.	.	.	.	.										.	.
Template Conservation		.	.																																																							.	.
Template Sequence		.	.	G	T	Y	F	L	C	A	D	P	R	P	L	G	Y	D	D	S	T	E	F	C	A	A	L	P	E	K	V	G	V	A	A	I	P	M	S	A	F	C	D	P	A	D	V	W	N	H	L	V	R	F	T	F	C	.	.	K	R	D	D	T	L	D	E	A	I	R	R	L	S	V	L	A	E
Template Known Secondary structure		.	.	B	S	S							G	G	G	T																S						G	G	G	G	S						G	G	G								.	.	S													G	G	G	G
Template Predicted Secondary structure		.	.																																																							.	.
Template SS confidence
				314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions