Job Description P0CF55 Confidence 99.66% Date Thu Jan 5 11:31:09 GMT 2012 Rank 12 Aligned Residues 139 % Identity 18% Template c1k6yB_ PDB info PDB header:transferase Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of a two-domain fragment of hiv-1 integrase Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	K	E	S	N	Q	R	W	C	S	D	G	F	E	F	C	C	D	N	G	E	R	L	R	V	T	F	A	L	D	C	C	D	R	E	A	L	H	W	A	V	T	T	G	G	F	N	S	E	T	V	Q	D	V	M	L	G	A	V	E	R	R	F	G	N	D	L	P	S	S	P	V	E	W	L	T	D	N	G
Query Conservation
Alig confidence																			.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	K	C	S	P	G	I	W	Q	L	D	C	T	H	L	E	.	.	.	.	.	G	K	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	I	P	A	E	T	G	Q	E	T	A	Y	F	L	L	K	L	A	G	R	.	.	.	.	.	.	.	.	.	W	P	V	K	T	V	H	T	D	N	G
Template Known Secondary structure							T	T										T	.	.	.	.	.	T									T	T	T	T								S	S	S																.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																			.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.										.	100	.	.	.	.	.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		S	C	Y	R	A	N	E	T	R	Q	F	A	R	M	L	G	L	E	P	K	N	T	A	V	R	S	P	E	S	N	G	I	A	E	S	F	V	K	T	I	K	R	D	Y	I	S	I	M	P	K	P	D	G	L	T	A	A	K	N	L	A	E	A	F	E	H	Y	N	E	W	H	P	H	S	A	L	G	Y	R	S
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.																											.	.																	.
Template Conservation																			.	.	.	.	.	.	.	.	.																											.	.																	.
Template Sequence		S	N	F	T	S	T	T	V	K	A	A	C	D	W	A	G	I	.	.	.	.	.	.	.	.	.	K	Q	E	D	G	V	I	E	S	M	N	K	E	L	K	K	I	I	G	Q	V	R	D	Q	A	E	.	.	H	L	K	T	A	V	Q	M	A	V	F	I	H	N	K	K	.	R	K	G	G	I	G	G	Y	S
Template Known Secondary structure						S										T	T		.	.	.	.	.	.	.	.	.																						G	G	G		S	.	.	S															S	.				T	T	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.																											.	.																	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.										.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.
		281	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	E	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	E	R	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions