Return to main results Retrieve Phyre Job Id

Job DescriptionP0AAI3
Confidence99.94%DateThu Jan 5 11:13:00 GMT 2012
Rank34Aligned Residues379
% Identity17%Templated1e94e_
SCOP infoP-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain
Resolution2.8

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   154.....160.........170.........180.. .......190.........200.........210.........220.... .
Predicted Secondary structure 





.......














.
Query SS confidence 




























. . . . . . .









































.
Query Sequence  VAGCDEAKEEVAELVEYLREPSRFQKLGG. . . . . . . KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM. F
Query Conservation 
 
    
  
 


  
         
 .......  
 



 







 

 


 
       

 
     . 
Alig confidence 















.....







.......









































.
Template Conservation 




 
   

 

 ..... 
  
            
 



 







 





  
  

   
 
   
 

Template Sequence  IIGQDNAKRSVAIALR. . . . . NRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY
Template Known Secondary structure 

S
.....TS







TTSSTTTT

GGGGGGGGT
Template Predicted Secondary structure 


.....





























Template SS confidence 















































































   17..20.........30.. .......40.........50.........60.........70.........80.........90.
 
   226. ..230.........240.........250.........260.........270.........280.........290.........300....
Predicted Secondary structure 

.


























Query SS confidence 

.












































































Query Sequence  VG. VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD
Query Conservation   
.     
   
  
    
 







 
   
              
  

  


      



 


    

Alig confidence 

.




























.......








































Template Conservation 

      

 
   
            

  .......           
        
                  
 
Template Sequence  VGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRA. . . . . . . EELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLR
Template Known Secondary structure  S


TTTTTTTT.......SSSTTTS


SS

S
SGGGSS


TTS
Template Predicted Secondary structure 




.......



















Template SS confidence 















































































   92.......100.........110.........120... ......130.........140.........150.........160....
 
   305....310.........320.........330.........340.........350.........360.........370.........380....
Predicted Secondary structure 
































Query SS confidence 















































































Query Sequence  PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVE
Query Conservation   








  
 
  
    
  

   
         

  

  
 
 




  
   

  
 
     
   
Alig confidence 


































..




































.




Template Conservation     
                               ..                                     .     
Template Sequence  EGQLDDKEIEKQKARKLKIKDAMKLLIEEEAAKLV. . NPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPD. VSREG
Template Known Secondary structure  S












S


TTT
..
ST
TGGGGS

TT
S.
Template Predicted Secondary structure 


















..










.
Template SS confidence 















































































   165....170.........180.........190......... 200.........210.........220.........230...... ...240.
 
   385....390.........400.........410.........420.........430.... .....440.........450.........460...
Predicted Secondary structure 
















.















Query SS confidence 

















































.




























Query Sequence  FEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKV. TIIPRGRALGVTFFLPEGDAISASRQKLE
Query Conservation     
   
  
                
 








  
     
 

.

 


 


 
   
       

  
 
Alig confidence 


















.......























.


















.








Template Conservation                     .......                        



 

  
  
  
    .
  

    
Template Sequence  VQRDLLPLVEGCTVSTKHG. . . . . . . MVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSD. FERILTEPN
Template Known Secondary structure 

TT.......GGG


SSS
GGGS
T






.SST
Template Predicted Secondary structure 









.......




















.
Template SS confidence 















































































   277..280.........290..... ....300.........310.........320.........330......... 340........
 
   464.....470.........480.........490.........500.........510.........520.........530.........540...
Predicted Secondary structure 








































Query SS confidence 















































































Query Sequence  SQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETAR
Query Conservation    
 
 








 

   




  

  

 

  

   


   
                       
  
  
Alig confidence 


















..

























.............................



Template Conservation    
            
 
 .. 
  
   

  
          


............................. 

 
Template Sequence  ASITVQYKALMATEGVNIE. . FTDSGIKRIAEAAWQVNESTENIGAR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . RLHT
Template Known Secondary structure  T
TT
..
S


TT.............................
Template Predicted Secondary structure 


..





.............................
Template SS confidence 















































































   349350.........360....... ..370.........380.........390... ....
 
   544.....550.........560.........570.........580......
Predicted Secondary structure 


Query SS confidence 










































Query Sequence  IIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDA
Query Conservation   

 

  

  
   
  

   
  
  

  


 


  
Alig confidence 










































Template Conservation   

  
              
 
    
      
       
Template Sequence  VLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSR
Template Known Secondary structure  GGGGTT


Template Predicted Secondary structure 








Template SS confidence 










































   398.400.........410.........420.........430.........440
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions