Job Description P0AAI3 Confidence 98.14% Date Thu Jan 5 11:13:00 GMT 2012 Rank 133 Aligned Residues 116 % Identity 15% Template c3qmzA_ PDB info PDB header:motor protein Chain: A: PDB Molecule:cytoplasmic dynein heavy chain; PDBTitle: crystal structure of the cytoplasmic dynein heavy chain motor domain Resolution 6.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	L	M	V	G	P	P	G	T	G	K	T	L	L	A	K	A	I	A	G	E	A	K	V	P	F	F	T	I	S	G	S	D	F	V	E	M	F	V	G	V	G	A	S	R	V	R	D	M	F	E	Q	A	K	K	A	A	P	C	I	I	F	I	D	E	I	D	A	V	G	R	Q	R	G	A	G	L	G	G
Query Conservation
Alig confidence																																				.	.	.	.	.	.																			.												.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.																			.												.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	C	F	F	G	P	A	G	T	G	K	T	E	T	V	K	A	F	G	Q	N	L	G	R	V	V	V	V	F	N	C	D	D	.	.	.	.	.	.	S	F	D	Y	Q	V	L	S	R	L	L	V	G	I	T	Q	I	G	.	A	W	G	C	F	D	E	F	N	R	L	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T							T	T	S	S									T	S	S											S	S	.	.	.	.	.	.	S	S		S												T	T		.							T	T	T	T	S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.																			.												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1791	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.	.	.							.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.		.	.	.	.	.	.	.	1850	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.																		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	H	D	E	R	E	Q	T	L	N	Q	M	L	V	E	M	D	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	N	E	G	I	I	V	I	A	A	T	N	R	P	D	V	L	D	P	A	L	L	R	P	G	R	F	D	R	Q	V	V	V	G	L	P	D	V	R	G	R	E	Q
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.							.	.	.									.
Template Conservation		.																																														.	.	.	.	.	.	.							.	.	.									.
Template Sequence		.	D	E	K	V	L	S	A	V	S	A	N	I	Q	Q	I	Q	N	G	L	Q	V	G	K	S	H	I	T	L	L	E	E	E	T	P	L	S	P	H	T	A	V	F	I	T	L	.	.	.	.	.	.	.	L	P	E	N	L	K	.	.	.	K	S	F	R	E	F	S	M	.	K	S	Q	S	G	T	I	A	E
Template Known Secondary structure		.	S																	T	S	T	T	S	S	S						S	S															.	.	.	.	.	.	.							.	.	.	T	T	T						.
Template Predicted Secondary structure		.																																														.	.	.	.	.	.	.							.	.	.									.
Template SS confidence
			1854	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.								.	1900	.	.	.	.				.	.	.	.	.	1910	.	.		.	.	.	.	.	.	.	1920	.
		330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1932	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions