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Job DescriptionP0AAI3
Confidence99.63%DateThu Jan 5 11:13:00 GMT 2012
Rank84Aligned Residues177
% Identity21%Templatec3nbxX_
PDB info PDB header:hydrolaseChain: X: PDB Molecule:atpase rava; PDBTitle: crystal structure of e. coli rava (regulatory atpase variant a) in2 complex with adp
Resolution2.91 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   188.190.........200......... 210.........220.. .......230.........240.........250.........260...
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Query Sequence  VLMVGPPGTGKTLLAKAIAGEA. KVPFFTISGSDFV. . . EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG
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Template Sequence  VFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSERLTSGYLPEAE. . . . . IVFLDEIWKAGPA. . . .
Template Known Secondary structure 

SSSSGGGGBSS



TT



B

B

TTSGGG
S.....SGGG

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   42.......50.........60.........70.........80.........90......... 100.........110..
 
   264.....270.........280... ......290.........300.... .....310.........320.........330..
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Query Sequence  LGGGHDEREQTLNQMLVEMD. . . . . . . . . GFEGNEGIIVIAATNRPDVLD. . PALLRPGRFDRQVVVGLPDVRGREQILK
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Template Sequence  . . . . . . . . . . ILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD. . RMLIRLWLDKVQDKANFRSML
Template Known Secondary structure  ..........SS
SSS



SS


TT
TTT..T



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   123......130.........140.........150.........160......... 170.........180.........190
 
   333......340..... ....350... ......360.........370........
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Query Sequence  VHMRRVPLAPDID. . . . . . . . . . . . . . . . . . . . . . . . . . . . AAIIARGT. . . . . . PGFSGADLANLVNEAALFAARGNKR
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Template Sequence  TSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRS
Template Known Secondary structure  T



TTS

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TTTSB
TT
B


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   191........200.........210.........220.........230.........240.........250.........260.........270
 
   379380.....
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Query Sequence  VVSMVEF
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Template Sequence  AVAPVDL
Template Known Secondary structure  B

GGGG
Template Predicted Secondary structure 


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   271......
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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