Job Description P0AAI3 Confidence 99.07% Date Thu Jan 5 11:13:00 GMT 2012 Rank 104 Aligned Residues 190 % Identity 24% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

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		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210			.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		D	V	A	G	C	D	E	A	K	E	E	V	A	E	L	V	E	Y	L	R	E	P	S	R	F	Q	K	L	G	G	K	I	P	K	G	V	L	M	V	G	P	P	G	T	G	K	T	L	L	A	K	A	I	A	G	E	A	K	.	.	V	P	F	F	T	I	S	G	S	D	F	V	E	M	F	V	G	V	G	A
Query Conservation																																																												.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.																														.	.																	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.																																																.	.	.	.
Template Sequence		E	F	V	G	E	H	P	K	I	L	E	I	K	R	L	I	P	K	I	.	.	.	.	.	.	.	.	.	.	A	K	S	K	A	P	V	L	I	T	G	E	S	G	T	G	K	E	I	V	A	R	L	I	H	R	Y	S	G	R	K	G	A	F	V	D	L	N	C	A	S	I	P	Q	E	L	A	.	.	.	.
Template Known Secondary structure							S														.	.	.	.	.	.	.	.	.	.		T	S		S								T	T	S	S																S							S	S	S	S		T	T	T		.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.																																																.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.											150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		231	.	.	.	.	.	.	.																.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.							.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Query Sequence		S	R	V	R	D	M	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	K	K	A	A	P	C	I	I	F	I	D	E	I	D	A	V	G	R	Q	R	G	A	G	L	G	G	G	H	D	E	R	E	Q	T	L	N	Q	M	L	V	E	.	.	.	.	.	.	M	D	G	F	E	G	N	E
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Alig confidence		.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation		.	.																																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	L	T	R	K	K	G	K	L	E	L	A	D	Q	G	T	L	F	L	D	E	V	G	E	L	.	.	.	.	.	.	.	.	.	.	.	D	Q	R	V	Q	A	K	L	L	R	V	L	E	T	G	S	F	T	R	L	G	G	N	Q	K	I	E	V
Template Known Secondary structure		.	.									S		S	S	S	S												T	T	T	S						T	G	G	G	S	.	.	.	.	.	.	.	.	.	.	.															S					B	T
Template Predicted Secondary structure		.	.																																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.												.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.								.	.	.	.	320	.	.	.	.	.	.	.	.	.										330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.
Predicted Secondary structure																												.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.																							.
Query SS confidence																												.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.																							.
Query Sequence		G	I	I	V	I	A	A	T	N	R	P	D	V	L	D	P	A	L	L	R	P	G	R	F	D	R	.	.	.	.	.	.	.	Q	V	V	V	G	L	P	D	V	R	G	R	E	Q	.	.	.	.	.	.	.	.	.	I	L	K	V	H	M	R	R	V	P	L	A	P	D	I	D	A	A	I	I	A	R	.	G
Query Conservation																												.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.																							.
Alig confidence														.	.	.												.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.																							.
Template Conservation														.	.	.
Template Sequence		D	I	R	V	I	S	A	T	N	K	N	L	.	.	.	E	E	E	I	K	K	G	N	F	R	E	D	L	Y	Y	R	L	S	V	F	Q	I	Y	L	P	P	L	R	E	R	G	K	D	V	I	L	L	A	E	Y	F	L	K	K	F	A	K	E	Y	K	K	N	C	F	E	L	S	E	E	T	K	E	Y	L	X
Template Known Secondary structure										S	S			.	.	.						T	T	S	S									T	S								G	G	G	S	T	T																	T	T						B
Template Predicted Secondary structure														.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		353	.	.	.	.	.			.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		T	P	G	F	S	G	.	.	A	D	L	A	N	L	V	N	E	A	A	L	F	A
Query Conservation								.	.
Alig confidence								.	.
Template Conservation
Template Sequence		K	Q	E	W	K	G	N	V	R	E	L	K	N	L	I	E	R	A	V	I	L	C
Template Known Secondary structure		T				T	T															T
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions