Job Description P0AAI3 Confidence 98.27% Date Thu Jan 5 11:13:00 GMT 2012 Rank 121 Aligned Residues 125 % Identity 16% Template c3co5B_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative two-component system transcriptional response PDBTitle: crystal structure of sigma-54 interaction domain of putative2 transcriptional response regulator from neisseria gonorrhoeae Resolution 2.40 Å

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		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210				.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		E	A	K	E	E	V	A	E	L	V	E	Y	L	R	E	P	S	R	F	Q	K	L	G	G	K	I	P	K	G	V	L	M	V	G	P	P	G	T	G	K	T	L	L	A	K	A	I	A	G	E	A	K	.	.	.	V	P	F	F	T	I	S	G	S	D	F	V	E	M	F	V	G	V	G	A	S	R	V	R	D
Query Conservation																																																						.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.																														.	.	.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	I	Q	E	X	N	R	E	V	E	A	A	.	.	.	.	.	.	.	.	.	.	A	K	R	T	S	P	V	F	L	T	G	E	A	G	S	P	F	E	T	V	A	R	Y	F	H	K	N	G	T	P	W	V	S	P	A	R	V	E	Y	L	I	D	X	.	.	.	.	.	.	.	.	.	.	.	P	X	E
Template Known Secondary structure															.	.	.	.	.	.	.	.	.	.		T		S	S								T	T									T	T			T	T	S						S	S	T	T						.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.											.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.												.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	E	Q	A	K	K	A	A	P	C	I	I	F	I	D	E	I	D	A	V	G	R	Q	R	G	A	G	L	G	G	G	H	D	E	R	E	Q	T	L	N	Q	M	L	V	E	M	D	G	F	E	G	N	E	G	I	I	V	I	A	A	T	N	R	P	D	V	L	D	P	A	L	L	R	P	G	R	F	D	R
Query Conservation
Alig confidence									.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template Conservation									.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template Sequence		L	L	Q	K	A	E	G	.	.	.	G	V	L	Y	V	G	D	I	A	Q	Y	S	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Q	T	G	I	T	F	I	I	G	K	A	E	R	C	R	V	R	V	I	A	S	C	S	Y	A	A	G	S	D	S	C	E	E	K	L	A	G	L	F	.	S
Template Known Secondary structure						T	T	T	.	.	.	S								T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	T	T											T	T	T											S	.	S
Template Predicted Secondary structure									.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template SS confidence
		199	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.	.	.															220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260
		316	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	V	V	G	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	V	V	R	I	P
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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