Job Description P0AAI3 Confidence 96.25% Date Thu Jan 5 11:13:00 GMT 2012 Rank 336 Aligned Residues 108 % Identity 22% Template c2o8dB_ PDB info PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh6; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g du mispair Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.						.	.	.	210	.	.														.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	K	G	V	L	M	V	G	P	P	G	T	G	K	T	L	L	A	K	A	I	A	.	.	.	.	.	G	E	A	K	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	F	F	T	I	S	G	S	D	F	V	E	M	F	V	G	V	G	A	S	R	V	R	D	M	F	E	Q	A	K	K	A	A	P	C
Query Conservation																								.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.												.	.
Template Conservation																																																												.	.	.	.	.												.	.
Template Sequence		A	Y	C	V	L	V	T	G	P	N	M	G	G	K	S	T	L	M	R	Q	A	G	L	L	A	V	M	A	Q	M	G	C	Y	V	P	A	E	V	C	R	L	T	P	I	D	R	V	F	T	R	L	G	S	T	F	F	V	E	.	.	.	.	.	L	S	E	T	A	S	I	L	M	H	A	.	.	T	A	H	S
Template Known Secondary structure								B			T	T	S	S																T	T	T			B	S	S	S								S	B													.	.	.	.	.												.	.		T	T
Template Predicted Secondary structure																																																												.	.	.	.	.												.	.
Template SS confidence
		1127	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.						.	.	.	.	.	1190	.	.	.	.	.			.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	F	I	D	E	I	D	A	V	G	R	Q	R	G	A	G	L	G	G	G	H	D	E	R	E	Q	T	L	N	Q	M	L	V	E	M	D	G	F	E	G	N	E	G	I	I	V	I	A	A	T	N	R	P	D	V	L	D	P	A	L	L	R	P	G
Query Conservation
Alig confidence									.	.	.	.	.																						.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.																						.	.	.	.	.	.	.
Template Sequence		L	V	L	V	D	E	L	.	.	.	.	.	G	R	G	T	A	T	F	D	G	T	A	I	A	N	A	V	V	K	E	L	A	.	.	.	.	.	.	.	E	T	I	K	C	R	T	L	F	S	T	H	Y	H	S	L	V	E	D	Y	S	Q	N	V	A
Template Known Secondary structure								S	.	.	.	.	.		T	T	S																		.	.	.	.	.	.	.		T	S																	T	S	S		S	S
Template Predicted Secondary structure									.	.	.	.	.																						.	.	.	.	.	.	.
Template SS confidence
		1209	1210	.	.	.	.	.						.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.								.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions