Job Description P0AAI3 Confidence 96.72% Date Thu Jan 5 11:13:00 GMT 2012 Rank 301 Aligned Residues 121 % Identity 20% Template c2o8bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna mismatch repair protein msh2; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g t mispair Resolution 2.75 Å

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		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.						.	.	.	210	.	.														.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																													.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	G	K	I	P	K	G	V	L	M	V	G	P	P	G	T	G	K	T	L	L	A	K	A	I	A	.	.	.	.	.	G	E	A	K	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	F	F	T	I	S	G	S	D	F	V	E	M	F	V	G	V	G	A	S	R	V	R	D	M	F	E	Q	A	K
Query Conservation																													.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template Conservation																																																														.	.	.	.	.
Template Sequence		F	E	K	D	K	Q	M	F	H	I	I	T	G	P	N	M	G	G	K	S	T	Y	I	R	Q	T	G	V	I	V	L	M	A	Q	I	G	C	F	V	P	C	E	S	A	E	V	S	I	V	D	C	I	L	A	R	V	G	S	T	F	.	.	.	.	.	M	A	E	M	L	E	T	A	S	I	L	R	S	A	T
Template Known Secondary structure				T	T	S	S								S	T	T	S	S																	T	T			B	S	S	S								S											.	.	.	.	.												T	T
Template Predicted Secondary structure																																																														.	.	.	.	.
Template SS confidence
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.						.	.	.	720	.	.	.	.	.	.	.	.	.	730	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	A	P	C	I	I	F	I	D	E	I	D	A	V	G	R	Q	R	G	A	G	L	G	G	G	H	D	E	R	E	Q	T	L	N	Q	M	L	V	E	M	D	G	F	E	G	N	E	G	I	I	V	I	A	A	T	N	R	P	D	V	L	D	P	A	L	L	R	P	G	R	F	D	R	Q	V	V	V
Query Conservation
Alig confidence				.	.									.	.	.	.	.																						.	.	.	.	.	.	.
Template Conservation				.	.									.	.	.	.	.																						.	.	.	.	.	.	.
Template Sequence		K	D	.	.	S	L	I	I	I	D	E	L	.	.	.	.	.	G	R	G	T	S	T	Y	D	G	F	G	L	A	W	A	I	S	E	Y	I	A	.	.	.	.	.	.	.	T	K	I	G	A	F	C	M	F	A	T	H	F	H	E	L	T	A	L	A	N	Q	I	P	T	V	N	N	L	H	V	T	A
Template Known Secondary structure		T	T	.	.	S						S		.	.	.	.	.			S	S																		.	.	.	.	.	.	.		T	T											T	T	S	T	T					S	S	S
Template Predicted Secondary structure				.	.									.	.	.	.	.																						.	.	.	.	.	.	.
Template SS confidence
		741	.			.	.	.	.	.	.	.	750						.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.								.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions