Return to main results Retrieve Phyre Job Id

Job DescriptionP0AAI3
Confidence97.57%DateThu Jan 5 11:13:00 GMT 2012
Rank208Aligned Residues130
% Identity28%Templatec2j289_
PDB info PDB header:ribosomeChain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs
Resolution8.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   158.160.... .....170.........180.........190.........200......
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Query Sequence  DEAKEEV. AELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  QEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETL
Template Known Secondary structure  TT
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   72.......80.........90.........100.........110.........120.........130.........140.........150.
 
   207..210.........220.........230.........240.........250.........260.........270.........280.....
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Query Sequence  . GEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF
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Template Sequence  AEQVGVDF. . . . . . . FPSDVGQKPVDIVNAALKEAKLKFYDVLLVD. . . . . . . . . . . . TAGRLHVDEAMMDEIKQVHASI
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   152....... 160.........170.........180.........190 .........200.........210..
 
   286...290.........300......
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Query Sequence  EGNEGIIVIAATNRPDVLDPA
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Template Sequence  NPVETLFVVDAMTGQDAANTA
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   213......220.........230...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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