Job Description P0AAI3 Confidence 100.00% Date Thu Jan 5 11:13:00 GMT 2012 Rank 1 Aligned Residues 453 % Identity 55% Template c2dhrC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:ftsh; PDBTitle: whole cytosolic region of atp-dependent metalloprotease2 ftsh (g399l) Resolution 3.90 Å

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		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	Q	I	K	T	T	F	A	D	V	A	G	C	D	E	A	K	E	E	V	A	E	L	V	E	Y	L	R	E	P	S	R	F	Q	K	L	G	G	K	I	P	K	G	V	L	M	V	G	P	P	G	T	G	K	T	L	L	A	K	A	I	A	G	E	A	K	V	P	F	F	T	I	S	G	S	D	F	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	A	P	K	V	T	F	K	D	V	A	G	A	E	E	A	K	E	E	L	K	E	I	V	E	F	L	K	N	P	S	R	F	H	E	M	G	A	R	I	P	K	G	V	L	L	V	G	P	P	G	V	G	K	T	H	L	A	R	A	V	A	G	E	A	R	V	P	F	I	T	A	S	G	S	D	F	V	E
Template Known Secondary structure			S						T	T	S	S		S																		G	G	G	T	T	T	T	S					S							S	T	T	S	S												T	T								G	G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	V	G	V	G	A	S	R	V	R	D	M	F	E	Q	A	K	K	A	A	P	C	I	I	F	I	D	E	I	D	A	V	G	R	Q	R	G	A	G	L	G	G	G	H	D	E	R	E	Q	T	L	N	Q	M	L	V	E	M	D	G	F	E	G	N	E	G	I	I	V	I	A	A	T	N	R	P	D	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	F	V	G	V	G	A	A	R	V	R	D	L	F	E	T	A	K	R	H	A	P	C	I	V	F	I	D	E	I	D	A	V	G	R	K	R	G	S	G	V	G	G	G	N	D	E	R	E	Q	T	L	N	Q	L	L	V	E	M	D	G	F	E	K	D	T	A	I	V	V	M	A	A	T	N	R	P	D	I	L
Template Known Secondary structure		S		T	T											T	T	S	T	T	S	S	S								G	G	G	T				S	S	S	S	T	T	T	S	S														G	G	G			S	S										S		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	A	L	L	R	P	G	R	F	D	R	Q	V	V	V	G	L	P	D	V	R	G	R	E	Q	I	L	K	V	H	M	R	R	V	P	L	A	P	D	I	D	A	A	I	I	A	R	G	T	P	G	F	S	G	A	D	L	A	N	L	V	N	E	A	A	L	F	A	A	R	G	N	K	R	V	V	S	M	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	P	A	L	L	R	P	G	R	F	D	R	Q	I	A	I	D	A	P	D	V	K	G	R	E	Q	I	L	R	I	H	A	R	G	K	P	L	A	E	D	V	D	L	A	L	L	A	K	R	T	P	G	F	V	G	A	D	L	E	N	L	L	N	E	A	A	L	L	A	A	R	E	G	R	R	K	I	T	M	K
Template Known Secondary structure			T	T	T	S	S	T	T	S	S																					T	T	S	S	S					S	S	T	T					T	T	S		S																							S	S			S
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	E	K	A	K	D	K	I	M	M	G	A	E	R	R	S	M	V	M	T	E	A	Q	K	E	S	T	A	Y	H	E	A	G	H	A	I	I	G	R	L	V	P	E	H	D	P	V	H	K	V	T	I	I	P	R	G	R	A	L	G	V	T	F	F	L	P	E	G	D	A	I	S	A	S	R	Q	K	L	E
Query Conservation
Alig confidence																																																																					.
Template Conservation																																																																					.
Template Sequence		D	L	E	E	A	A	D	R	V	M	M	L	P	A	K	K	S	L	V	L	S	P	R	D	R	R	I	T	A	Y	H	E	A	G	H	A	L	A	A	H	F	L	E	H	A	D	G	V	H	K	V	T	I	V	P	R	G	R	A	L	G	F	M	M	P	R	R	.	E	D	M	L	H	W	S	R	K	R	L	L
Template Known Secondary structure											T	T		S	S	S	S						T	T																			S	S	S									S			S	S	S	T	T		S	S					.	T	T
Template Predicted Secondary structure																																																																					.
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.		.	.	.	.	.	460	.	.	.	.	.	.
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	I	S	T	L	Y	G	G	R	L	A	E	E	I	I	Y	G	P	E	H	V	S	T	G	A	S	N	D	I	K	V	A	T	N	L	A	R	N	M	V	T	Q	W	G	F	S	E	K	L	G	P	L	L	Y	A	E	E	E	G	E	V	F	L	G	R	S	V	A	K	A	K	H	M	S	D	E	T	A	R
Query Conservation
Alig confidence																					.	.																																															.	.	.
Template Conservation																					.	.																																															.	.	.
Template Sequence		D	Q	I	A	V	A	L	A	G	R	A	A	E	E	I	V	F	D	D	.	.	V	T	T	G	A	E	N	D	F	R	Q	A	T	E	L	A	R	R	M	I	T	E	W	G	M	H	P	E	F	G	P	V	A	Y	A	V	R	E	D	T	Y	L	G	G	Y	D	.	.	.	V	R	Q	Y	S	E	E	T	A	K
Template Known Secondary structure																		S		S	.	.																						T	S				S	S	S		S										S	S					.	.	.
Template Predicted Secondary structure																					.	.																																															.	.	.
Template SS confidence
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.			.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.				.	.	.	.	.	.	.	.	540	.
		544	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	D	Q	E	V	K	A	L	I	E	R	N	Y	N	R	A	R	Q	L	L	T	D	N	M	D	I	L	H	A	M	K	D	A	L	M	K	Y	E	T	I	D	A	P	Q	I	D	D	L	M	A	R	R	D	V	R	P	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	D	E	A	V	R	R	L	I	E	E	Q	Y	Q	R	V	K	A	L	L	L	E	K	R	E	V	L	E	R	V	A	E	T	L	L	E	R	E	T	L	T	A	E	E	F	Q	R	V	V	E	G	L	P	L	E	A	P	E
Template Known Secondary structure																									T															S												T	T
Template Predicted Secondary structure
Template SS confidence
		542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600