Job Description P0AAI3 Confidence 99.84% Date Thu Jan 5 11:13:00 GMT 2012 Rank 62 Aligned Residues 214 % Identity 21% Template c2chgB_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c domains 1 and 2 Resolution 2.1 Å

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		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	M	L	T	E	D	Q	I	K	T	T	F	A	D	V	A	G	C	D	E	A	K	E	E	V	A	E	L	V	E	Y	L	R	E	P	S	R	F	Q	K	L	G	G	K	I	P	K	G	V	L	M	V	G	P	P	G	T	G	K	T	L	L	A	K	A	I	A	G	E	A	K	V	P	F	F	T	I	S	G
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	E	I	W	V	E	K	Y	R	P	R	T	L	D	E	V	V	G	Q	D	E	V	I	Q	R	L	K	G	Y	V	E	.	.	.	.	.	.	.	.	.	.	.	.	R	K	N	I	P	H	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	F	G	E	N	W	R	D	N	F
Template Known Secondary structure									T	S		S	S	G	G	G			S														.	.	.	.	.	.	.	.	.	.	.	.	T	T									S		T	T	S	S														G	G	G	T	G	G	G
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.													.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.						.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																												.	.	.	.	.
Query SS confidence																												.	.	.	.	.
Query Sequence		S	D	F	V	E	M	F	V	G	V	G	A	S	R	V	R	D	M	F	E	Q	A	K	K	A	A	.	.	.	.	.	P	C	I	I	F	I	D	E	I	D	A	V	G	R	Q	R	G	A	G	L	G	G	G	H	D	E	R	E	Q	T	L	N	Q	M	L	V	E	M	D	G	F	E	G	N	E	G	I	I	V
Query Conservation																												.	.	.	.	.
Alig confidence																												.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Sequence		I	E	M	N	A	S	D	E	R	G	I	D	V	V	R	H	K	I	K	E	F	A	R	T	A	P	I	G	G	A	P	F	K	I	I	F	L	D	E	A	D	A	L	T	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	A	A	L	R	R	T	M	E	.	.	M	Y	S	K	S	C	R	F
Template Known Secondary structure						T	T		T	T														T	S			S	T	T		S								T	G	G	G	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.			T	T	T
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.															.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		I	A	A	T	N	R	P	D	V	L	D	P	A	L	L	R	P	G	R	F	D	R	Q	V	V	V	G	L	P	D	V	R	G	R	E	Q	I	L	K	V	H	M	R	R	V	P	L	A	.	P	D	I	D	A	A	I	I	A	R	G	T	P	G	F	S	G	A	D	L	A	N	L	V	N	E	A	A	L	F	A
Query Conservation																																																		.
Alig confidence																		.	.			.																												.															.
Template Conservation																		.	.			.																																											.
Template Sequence		I	L	S	C	N	Y	V	S	R	I	I	E	P	I	Q	S	.	.	R	C	.	A	V	F	R	F	K	P	V	P	K	E	A	M	K	K	R	L	L	E	I	C	E	K	E	G	V	K	I	T	E	D	G	L	E	A	L	I	Y	I	S	G	G	.	D	F	R	K	A	I	N	A	L	Q	G	A	A	A	I	G
Template Known Secondary structure						S		G	G	G	S							.	.	T		.																									T																T	T	.														T	T
Template Predicted Secondary structure																		.	.			.																																											.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	G	N	K	R	V	V	S	M	V	E	F	E	K	A	K
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	E	V	V	D	A	D	T	I	Y	Q	I	T
Template Known Secondary structure		.	.	.	.	.	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							212	.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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