Job Description P0AAI3 Confidence 99.59% Date Thu Jan 5 11:13:00 GMT 2012 Rank 87 Aligned Residues 203 % Identity 23% Template c2c99A_ PDB info PDB header:transcription regulation Chain: A: PDB Molecule:psp operon transcriptional activator; PDBTitle: structural basis of the nucleotide driven conformational2 changes in the aaa domain of transcription activator pspf Resolution 1.9 Å

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		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.						220	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.											.	.	.	.	.
Query SS confidence																																																										.	.	.											.	.	.	.	.
Query Sequence		V	A	G	C	D	E	A	K	E	E	V	A	E	L	V	E	Y	L	R	E	P	S	R	F	Q	K	L	G	G	K	I	P	K	G	V	L	M	V	G	P	P	G	T	G	K	T	L	L	A	K	A	I	A	G	E	A	.	.	.	K	V	P	F	F	T	I	S	G	S	.	.	.	.	.	D	F	V	E	M	F
Query Conservation																																																										.	.	.											.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.																													.	.	.											.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	G	E	A	N	S	F	L	E	V	L	E	Q	V	S	H	L	.	.	.	.	.	.	.	.	.	.	A	P	L	D	K	P	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F	I	S	L	N	C	A	A	L	N	E	N	L	L	D	S	E	L
Template Known Secondary structure																				.	.	.	.	.	.	.	.	.	.	T	T	S		S								T	T	S	S											T	S	T	T	T	T	S							G	G	G	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.											.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.							.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.																		.
Query SS confidence																																																										.	.	.	.	.	.																		.
Query Sequence		V	G	V	G	A	S	R	V	R	D	M	F	E	Q	A	K	K	A	A	P	C	I	I	F	I	D	E	I	D	A	V	G	R	Q	R	G	A	G	L	G	G	G	H	D	E	R	E	Q	T	L	N	Q	M	L	V	E	.	.	.	.	.	.	M	D	G	F	E	G	N	E	G	I	I	V	I	A	A	T	N	.
Query Conservation																																																										.	.	.	.	.	.																		.
Alig confidence																			.	.	.												.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.																		.
Template Conservation																			.	.	.												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	G	H	E	A	K	R	H	P	G	R	F	E	R	A	D	G	.	.	.	G	T	L	F	L	D	E	L	A	T	A	.	.	.	.	.	.	.	.	.	.	.	P	M	M	V	Q	E	K	L	L	R	V	I	E	Y	G	E	L	E	R	V	G	G	S	Q	P	L	Q	V	N	V	R	L	V	C	A	T	N	A
Template Known Secondary structure				B					B							T	T	T	.	.	.	S						S	G	G	G	S	.	.	.	.	.	.	.	.	.	.	.															S						S	S	S														S	S
Template Predicted Secondary structure																			.	.	.												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.				.	.	.	.	.	100	.	.	.	.	.												.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
								299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330								.	.	.	.	.	.	.	.	.	340	.	.	.	.	.						.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure		.	.	.	.	.	.																																	.	.	.	.	.	.	.																.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																	.	.	.	.	.	.	.																.	.	.	.	.
Query Sequence		.	.	.	.	.	.	R	P	D	V	L	D	P	A	L	L	R	P	G	R	F	D	R	Q	V	V	V	G	L	P	D	V	R	G	R	E	Q	I	.	.	.	.	.	.	.	L	K	V	H	M	R	R	V	P	L	A	P	D	I	D	.	.	.	.	.	A	A	I	I	A	R	G	T	P	G	F	S	G	A	D
Query Conservation		.	.	.	.	.	.																																	.	.	.	.	.	.	.																.	.	.	.	.
Alig confidence		.	.	.	.	.	.												.	.																				.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation																			.	.
Template Sequence		D	L	P	A	M	V	N	E	G	T	F	R	A	D	L	L	D	.	.	R	L	A	F	D	V	V	Q	L	P	P	L	R	E	R	E	S	D	I	M	L	M	A	E	Y	F	A	I	Q	M	C	R	E	I	K	L	P	L	F	P	G	F	T	E	R	A	R	E	T	L	L	N	Y	R	W	P	G	N	I	R	E
Template Known Secondary structure										T	S	S							.	.				S								G	G	G	S																			T	T		S	S				B											S			T	T
Template Predicted Secondary structure																			.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	N	L	V	N	E	A	A	L	F	A	A	R	G	N	K	R	V	V	S	M	V	E	F
Query Conservation
Alig confidence														.	.	.
Template Conservation														.	.	.
Template Sequence		L	K	N	V	V	E	R	S	V	Y	R	H	.	.	.	G	T	S	D	Y	P	L	D	D	I
Template Known Secondary structure														.	.	.			S	S	S		B
Template Predicted Secondary structure														.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240				.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions