Job Description P0AAI3 Confidence 99.75% Date Thu Jan 5 11:13:00 GMT 2012 Rank 72 Aligned Residues 217 % Identity 22% Template c1sxjC_ PDB info PDB header:replication Chain: C: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.						.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.
Query Sequence		L	T	E	D	Q	I	K	T	T	F	A	D	V	A	G	C	D	E	A	K	E	E	V	A	E	L	V	E	Y	L	R	E	P	S	R	F	Q	K	L	G	G	K	I	P	K	G	V	L	M	V	G	P	P	G	T	G	K	T	L	L	A	K	A	I	A	G	E	A	K	V	P	.	.	.	.	.	F	F	T	I
Query Conservation																																																																									.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.							.																										.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.							.
Template Sequence		W	V	E	K	Y	R	P	E	T	L	D	E	V	Y	G	Q	N	E	V	I	T	T	V	R	K	F	V	D	.	.	.	.	.	.	.	.	.	.	.	E	G	K	L	P	H	.	L	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	V	A	L	A	R	E	I	Y	G	K	N	Y	S	N	M	V	L	E	L
Template Known Secondary structure						T			S	S	G	G	G			S														.	.	.	.	.	.	.	.	.	.	.	T	T					.						S	S	S	S	S														T	T	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.							.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.												.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	S	D	F	V	E	M	F	V	G	V	G	A	S	R	V	R	D	M	F	E	Q	A	K	K	A	A	P	C	I	I	F	I	D	E	I	D	A	V	G	R	Q	R	G	A	G	L	G	G	G	H	D	E	R	E	Q	T	L	N	Q	M	L	V	E	M	D	G	F	E	G	N	E	G	I	I	V	I	A	A
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Sequence		N	A	S	D	D	R	G	I	D	V	V	R	N	Q	I	K	D	F	A	S	T	R	Q	I	F	S	K	G	F	K	L	I	I	L	D	E	A	D	A	M	T	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	N	A	L	R	R	V	I	E	.	.	R	Y	T	K	N	T	R	F	C	V	L
Template Known Secondary structure			T	T	S			S						T								S			S	S	S		S							T	T	G	G	G	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.		T	T	T	T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.															.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	R	P	D	V	L	D	P	A	L	L	R	P	G	R	F	D	R	Q	V	V	V	G	L	P	D	V	R	G	R	E	Q	I	L	K	V	H	M	R	R	V	P	L	A	P	D	I	D	A	A	I	I	A	R	G	T	P	G	F	S	G	A	D	L	A	N	L	V	N	E	A	A	L	F	A	A	R	G	N
Query Conservation
Alig confidence															.	.																																																			.
Template Conservation															.	.																																																			.
Template Sequence		A	N	Y	A	H	K	L	T	P	A	L	L	S	.	.	Q	C	T	R	F	R	F	Q	P	L	P	Q	E	A	I	E	R	R	I	A	N	V	L	V	H	E	K	L	K	L	S	P	N	A	E	K	A	L	I	E	L	S	N	G	D	M	R	R	V	L	.	N	V	L	Q	S	C	K	A	T	L	D	N	P	D
Template Known Secondary structure			S		G	G	G	S						T	.	.	T	S																							T	T	T			B													T	T							.			T	T	T	T	T	T	T	T		S	S	S
Template Predicted Secondary structure															.	.																																																			.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.
		377	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	V	V	S	M	V	E	F	E	K	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	E	I	S	D	D	V	I	Y	E	C	C
Template Known Secondary structure					B									T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions