Job Description P0AAI3 Confidence 99.70% Date Thu Jan 5 11:13:00 GMT 2012 Rank 77 Aligned Residues 189 % Identity 18% Template c1sxjB_ PDB info PDB header:replication Chain: B: PDB Molecule:activator 1 37 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	A	D	V	A	G	C	D	E	A	K	E	E	V	A	E	L	V	E	Y	L	R	E	P	S	R	F	Q	K	L	G	G	K	I	P	K	G	V	L	M	V	G	P	P	G	T	G	K	T	L	L	A	K	A	I	A	G	E	A	K	V	P	F	F	T	I	S	G	S	D	F	V	E	M	F	V	G	V	G
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	S	D	I	V	G	N	K	E	T	I	D	R	L	Q	Q	I	A	K	.	.	.	.	.	.	.	.	.	.	.	.	D	G	N	M	P	H	M	I	I	S	G	M	P	G	I	G	K	T	T	S	V	H	C	L	A	H	E	L	L	G	R	S	Y	A	D	G	V	L	E	L	N	A	S	D	D	R	G	I
Template Known Secondary structure		S	G	G	G			S		T												.	.	.	.	.	.	.	.	.	.	.	.	S											S	T	T	S	S														G	G	G										T	T	S			S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.													.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.							.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.
Query Sequence		A	S	R	V	R	D	M	F	E	Q	A	K	K	A	A	.	.	.	.	.	.	P	C	I	I	F	I	D	E	I	D	A	V	G	R	Q	R	G	A	G	L	G	G	G	H	D	E	R	E	Q	T	L	N	Q	M	L	V	E	M	D	G	F	E	G	N	E	G	I	I	V	I	A	A	T	N	R	P	D	V	L
Query Conservation																	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Sequence		D	V	V	R	N	Q	I	K	H	F	A	Q	K	K	L	H	L	P	P	G	K	H	K	I	V	I	L	D	E	A	D	S	M	T	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	Q	A	L	R	R	T	M	E	.	.	L	Y	S	N	S	T	R	F	A	F	A	C	N	Q	S	N	K	I
Template Known Secondary structure						T														T	T									S	G	G	G	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T						.	.		T	T	T	T								S		G	G	G	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.															.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.		.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		D	P	A	L	L	R	P	G	R	F	D	R	Q	V	V	V	G	L	P	D	V	R	G	R	E	Q	I	L	.	K	V	H	M	R	R	V	P	L	A	P	D	I	D	A	A	I	I	A	R	G	T	P	G	F	S	G	A	D	L	A	N	L	V	N	E	A	A
Query Conservation																														.
Alig confidence							.	.	.																					.
Template Conservation							.	.	.
Template Sequence		I	E	P	L	Q	.	.	.	S	Q	C	A	I	L	R	Y	S	K	L	S	D	E	D	V	L	K	R	L	L	Q	I	I	K	L	E	D	V	K	Y	T	N	D	G	L	E	A	I	I	F	T	A	E	G	D	M	R	Q	A	I	N	N	L	Q	S	T	V	A
Template Known Secondary structure							.	.	.	T	T	S																									T			B													T	T
Template Predicted Secondary structure							.	.	.
Template SS confidence
		151	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions