Job Description P0AAI3 Confidence 99.71% Date Thu Jan 5 11:13:00 GMT 2012 Rank 76 Aligned Residues 204 % Identity 22% Template c1ojlF_ PDB info PDB header:response regulator Chain: F: PDB Molecule:transcriptional regulatory protein zrar; PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding Resolution 3.0 Å

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		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220										.
Predicted Secondary structure																																																									.	.	.													.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.													.	.	.	.	.	.	.	.	.
Query Sequence		V	A	G	C	D	E	A	K	E	E	V	A	E	L	V	E	Y	L	R	E	P	S	R	F	Q	K	L	G	G	K	I	P	K	G	V	L	M	V	G	P	P	G	T	G	K	T	L	L	A	K	A	I	A	G	E	.	.	.	A	K	V	P	F	F	T	I	S	G	S	D	.	.	.	.	.	.	.	.	.	F
Query Conservation																																																									.	.	.													.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.																												.	.	.													.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.
Template Sequence		M	I	G	S	S	P	A	M	Q	H	L	L	N	E	I	A	M	V	.	.	.	.	.	.	.	.	.	.	A	P	S	D	A	T	V	L	I	H	G	D	S	G	T	G	K	E	L	V	A	R	A	L	H	A	C	S	A	R	S	D	R	P	L	V	T	L	N	C	A	A	L	N	E	S	L	L	E	S	E	L
Template Known Secondary structure																				.	.	.	.	.	.	.	.	.	.		S	T	T									T	T	S	S												S	S		S	S	S								T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.											.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.										.	290	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.
Query Sequence		V	E	M	F	V	G	V	G	A	S	R	V	R	D	M	F	E	Q	A	K	K	A	A	P	C	I	I	F	I	D	E	I	D	A	V	G	R	Q	R	G	A	G	L	G	G	G	H	D	E	R	E	Q	T	L	N	Q	M	L	V	E	M	D	G	F	E	G	N	.	.	.	.	.	.	.	.	.	E	G	I	I
Query Conservation																																																																					.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	G	H	E	K	G	A	F	T	K	R	R	E	G	R	F	V	E	A	.	.	.	D	G	G	T	L	F	L	D	E	I	G	D	I	S	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	Q	V	R	L	L	R	A	I	Q	E	R	E	V	Q	R	V	G	S	N	Q	T	I	S	V	D	V	R
Template Known Secondary structure		T				S	S	S								T	T	G	G	G	.	.	.	T	T	S							G	G	G					.	.	.	.	.	.	.	.	.	.	.	.	.	.											S	S					S	S	S
Template Predicted Secondary structure																					.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.															.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		293	.	.	.	.	.	.	300	.								.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.												.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	I	A	A	T	N	R	P	D	.	.	.	.	.	.	.	V	L	D	P	A	L	L	R	P	G	R	F	D	R	Q	V	V	V	G	L	P	D	V	R	G	R	E	Q	I	L	K	V	.	.	.	.	.	.	.	.	.	.	.	H	M	R	R	V	P	L	A	P	D	I	D	A	A	I	I	A	R	G	T	P
Query Conservation											.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.									.	.																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.
Template Sequence		L	I	A	A	T	H	R	D	L	A	E	E	V	S	A	G	R	F	R	Q	D	L	Y	Y	.	.	R	L	N	V	V	A	I	E	M	P	S	L	R	Q	R	R	E	D	I	P	L	L	A	D	H	F	L	R	R	F	A	E	R	N	R	K	V	V	K	G	F	T	P	Q	A	M	D	L	L	I	H	Y	D	W
Template Known Secondary structure							S	S									T	S	S							.	.				S								G	G	G	G	G	G	G																T	T						B
Template Predicted Secondary structure																										.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	S	G	A	D	L	A	N	L	V	N	E	A	A	L	F	A	A	R	G	N	K	R	V	V	S	M	V	E	F	E	K	A	K
Query Conservation
Alig confidence																				.	.	.
Template Conservation																				.	.	.
Template Sequence		P	G	N	I	R	E	L	E	N	A	I	E	R	A	V	V	L	L	.	.	.	T	G	E	Y	I	S	E	R	E	L	P	L	A	I
Template Known Secondary structure		T	T																	.	.	.		S	S	S	B		G	G	G	S		G	G	G
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.				.	.	.	.	.	.	.	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions