Job Description P0AAI3 Confidence 99.00% Date Thu Jan 5 11:13:00 GMT 2012 Rank 107 Aligned Residues 201 % Identity 18% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence		V	A	G	C	D	E	A	K	E	E	V	A	E	L	V	E	Y	L	R	E	P	S	R	F	Q	K	L	G	G	K	I	P	K	G	V	L	M	V	G	P	P	G	T	G	K	T	L	L	A	K	A	I	A	G	E	.	.	.	A	K	V	P	F	F	T	I	S	G	S	D	F	V	E	M	F	V	G	V	G	A
Query Conservation																																																									.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.																												.	.	.														.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template Sequence		Y	V	F	E	S	P	K	M	K	E	I	L	E	K	I	K	K	I	.	.	.	.	.	.	.	.	.	.	S	C	A	E	C	P	V	L	I	T	G	E	S	G	V	G	K	E	V	V	A	R	L	I	H	K	L	S	D	R	S	K	E	P	F	V	A	L	N	V	A	S	I	.	.	.	.	.	.	.	P	R
Template Known Secondary structure						S														.	.	.	.	.	.	.	.	.	.	T	T			S							S	T	T	S	S												S	T	T	T	T	S							T	T	T	S	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.											.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.								200	.
		231	.	.	.	.																				.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.							.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.
Query Sequence		S	R	V	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	F	E	Q	A	K	K	A	A	P	C	I	I	F	I	D	E	I	D	A	V	G	R	Q	R	G	A	G	L	G	G	G	H	D	E	R	E	Q	T	L	N	Q	M	L	V	E	M	.	.	.	.	.	.	D	G	F
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.												.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Conservation																																	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	I	F	E	A	E	L	F	G	Y	E	K	G	A	F	T	G	A	V	S	S	K	E	G	F	F	E	L	A	D	G	.	.	.	G	T	L	F	L	D	E	I	G	E	L	.	.	.	.	.	.	.	.	.	.	.	S	L	E	A	Q	A	K	L	L	R	V	I	E	S	G	K	F	Y	R	L	G	G	R	K
Template Known Secondary structure											B		T	T	S	S	T	T			S		B							T	T	T	.	.	.	S						S	G	G	G		.	.	.	.	.	.	.	.	.	.	.															S					B	T			S
Template Predicted Secondary structure																																	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.				.	.	.	.	.	.	.	240	.	.	.												.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.			.	.	.	.	320	.	.	.	.	.	.	.	.	.					330	.	.	.	.	.	.	.	.	.						340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																	.	.																.	.															.	.	.	.											.	.	.	.	.
Query SS confidence																	.	.																.	.															.	.	.	.											.	.	.	.	.
Query Sequence		E	G	N	E	G	I	I	V	I	A	A	T	N	R	P	.	.	D	V	L	D	P	A	L	L	R	P	G	R	F	D	R	.	.	Q	V	V	V	G	L	P	D	V	R	G	R	E	Q	.	.	.	.	I	L	K	V	H	M	R	R	V	P	.	.	.	.	.	L	A	P	D	I	D	A	A	I	I	A	R	G
Query Conservation																	.	.																.	.															.	.	.	.											.	.	.	.	.
Alig confidence																	.	.																.	.															.	.	.	.											.	.	.	.	.
Template Conservation
Template Sequence		E	I	E	V	N	V	R	I	L	A	A	T	N	R	N	I	K	E	L	V	K	E	G	K	F	R	E	D	L	Y	Y	R	L	G	V	I	E	I	E	I	P	P	L	R	E	R	K	E	D	I	I	P	L	A	N	H	F	L	K	K	F	S	R	K	Y	A	K	E	V	E	G	F	T	K	S	A	Q	E	L	L
Template Known Secondary structure														S	S								T	T	S	S									T	T								G	G	G																				T	T
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	G	F	S	G	A	D	L	A	N	L	V	N	E	A	A	L	F	A	A	R	G	N	K	R	V	V	S	M	V	E	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	Y	P	W	Y	G	N	V	R	E	L	K	N	V	I	E	R	A	V	L	F	S	E	G	K	F	I	D	R	G	E	L
Template Known Secondary structure				S			T	T																		S	S
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions