Job Description P77743 Confidence 99.91% Date Thu Jan 5 12:32:24 GMT 2012 Rank 12 Aligned Residues 356 % Identity 16% Template c3pxiB_ PDB info PDB header:protein binding Chain: B: PDB Molecule:negative regulator of genetic competence clpc/mecb; PDBTitle: structure of meca108:clpc Resolution 6.93 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.						.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																											.	.	.	.	.
Query SS confidence																																											.	.	.	.	.
Query Sequence		S	V	T	R	L	F	E	L	F	R	D	I	S	L	E	F	D	H	L	A	N	I	T	P	I	Q	L	G	F	E	K	A	V	T	Y	I	R	K	K	L	A	.	.	.	.	.	N	E	R	C	D	A	I	I	A	A	G	S	N	G	A	Y	L	K	S	R	L	S	V	P	V	I	L	I	K	P	S	G	Y	D
Query Conservation																																											.	.	.	.	.
Alig confidence																																											.	.	.	.	.																									.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.
Template Sequence		S	V	D	E	S	I	Q	I	L	Q	G	L	R	D	R	Y	E	A	H	H	R	V	S	I	T	D	D	A	I	E	A	A	V	K	L	S	D	R	Y	I	S	D	R	F	L	P	D	K	A	I	D	L	I	D	E	A	G	S	K	V	R	L	R	S	F	T	P	N	L	K	.	.	.	.	.	E	L	E	Q	K
Template Known Secondary structure																		G	G	G	S	S		S																S	S			S		T	T																							T	T	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.						.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.							.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.
Query Sequence		V	L	Q	A	L	A	K	A	G	K	L	T	S	S	I	G	V	V	T	Y	Q	E	T	I	P	A	L	V	A	F	Q	K	T	F	N	L	.	.	.	.	.	.	R	L	D	Q	R	S	Y	I	T	E	E	D	A	R	G	Q	I	N	E	L	K	A	N	G	T	E	A	V	V	G	A	G	L	I	T	D	L	A
Query Conservation																																						.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	E	V	R	K	E	K	D	A	A	V	Q	S	Q	E	F	E	K	A	A	S	L	R	D	T	E	Q	R	L	R	E	Q	V	E	D	T	K	K	S	W	K	E	K	Q	G	Q	E	E	V	T	V	D	D	I	A	M	V	V	S	S	W	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														T	T			S																			T	T	T	G	G	G						T				T														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.								.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.
Query Sequence		E	E	A	G	M	T	G	I	F	I	Y	S	A	A	T	V	R	Q	A	F	S	D	A	L	D	M	T	R	M	S	L	R	H	N	T	H	D	A	T	R	N	A	L	R	T	R	Y	V	L	G	D	M	L	G	Q	S	P	Q	M	E	Q	V	R	Q	T	I	L	L	Y	.	.	.	.	.	.	.	A	R	S	S
Query Conservation																																																																							.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	T	E	T	D	K	L	L	N	M	E	N	I	L	H	S	R	V	I	G	Q	D	E	A	V	V	A	V	A	K	A	V	R	R	A	R	A	G	L	K	D	P	K	R	P	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T							T	T	S		S																T	T	T		S		T	T	S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																				493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	V	L	I	E	G	E	T	G	T	G	K	E	L	A	A	Q	A	I	H	R	E	Y	F	A	R	H	D	A	R	Q	G	K	K	S	H	P	F	V	A	V	N	C	G	A	I	A	E	S	L	L	E	A	E	L	F	G	Y	E	E	G	A	F	T	G	S	R	R	G	G	R	A	G	L	F	E	I	A	H
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.
Template Sequence		G	S	F	I	F	L	G	P	T	G	V	G	K	T	E	L	A	R	A	L	A	E	S	I	F	G	.	.	.	.	.	.	.	.	D	E	E	S	M	I	R	I	D	M	.	.	.	.	.	.	.	.	.	S	E	Y	M	E	K	H	S	T	S	L	T	E	K	.	.	.	.	.	.	.	.	V	R	R	K	P
Template Known Secondary structure								S		T	T	S	S														S	.	.	.	.	.	.	.	.		T	T							G	.	.	.	.	.	.	.	.	.	G	G	G		S	S									.	.	.	.	.	.	.	.					S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.
Template SS confidence
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.									.	.	.	.	.	570	.	.	.	.										.	.	.	.	.	580	.	.	.	.	.	.	.	.									.	590	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	T	L	F	L	D	E	I	G	E	M	P	L	P	L	Q	T	R	L	L	R	V	L	E	E	K	E	V	T	R	V	G	G	H	Q	P	V	P	V	D	V	R	V	I	S	A	T	H	C	N	L	E	E	D	M	Q	Q	G	R	F	R	R	D	L	F	Y	R	L	S	I	L	R	L	Q	L	P	P	L	R
Query Conservation
Alig confidence																																																																										.							.
Template Conservation																																																																										.							.
Template Sequence		Y	S	V	V	L	L	D	A	I	E	K	A	H	P	D	V	F	N	I	L	L	Q	V	L	E	D	G	R	L	T	T	V	D	F	R	N	T	I	L	I	M	T	S	N	V	G	A	S	E	K	D	K	V	M	G	E	L	K	R	A	F	R	P	E	F	I	N	R	I	D	E	I	.	I	V	F	H	E	K	.
Template Known Secondary structure		S	S							G	G	G	S															S	B					B		T	T								S	S	S	T	T													S						T	T	S	S			.							.
Template Predicted Secondary structure																																																																										.							.
Template SS confidence
		611	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.		.	.	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.			.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		E	R	V	A	D	I	L	P	L	A	E	S	F	L	K	V	S	L	A	A	L	S	A	P	F	S	A	A	L	R	Q	G	L	Q	A	S	E	T	V	L	L	H	.	.	Y	D	W	P	G	N	I	R	E	L	R	N	M	M	E	R	L	A	L
Query Conservation																																												.	.
Alig confidence		.	.	.																						.	.																	.	.
Template Conservation		.	.	.																						.	.
Template Sequence		.	.	.	K	H	L	T	E	I	V	S	L	M	S	D	Q	L	T	K	R	L	K	E	Q	.	.	D	L	S	I	E	L	T	D	A	A	K	A	K	V	A	E	E	G	V	D	L	E	Y	G	A	R	P	L	R	R	A	I	Q	K	H	V	E
Template Known Secondary structure		.	.	.																				T	T	.	.	T															G	G	G			T	T	T	T	T	T	T									T
Template Predicted Secondary structure		.	.	.																						.	.
Template SS confidence
					717	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.			.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.