Job Description P77743 Confidence 99.04% Date Thu Jan 5 12:32:24 GMT 2012 Rank 69 Aligned Residues 198 % Identity 25% Template c3h4mC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:proteasome-activating nucleotidase; PDBTitle: aaa atpase domain of the proteasome- activating nucleotidase Resolution 3.11 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.												.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	G	D	M	L	G	Q	S	P	Q	M	E	Q	V	R	Q	T	I	L	L	Y	A	.	.	.	.	.	.	.	.	.	.	.	R	S	S	A	A	V	L	I	E	G	E	T	G	T	G	K	E	L	A	A	Q	A	I	H	R	E	Y	F	A	R	H	D	A	R	Q	G	K	K	S	H	P	F	V	A	V	N
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	Y	E	D	I	G	G	L	E	K	Q	M	Q	E	I	R	E	V	V	E	L	P	L	K	H	P	E	L	F	E	K	V	G	I	E	P	P	K	G	I	L	L	Y	G	P	P	G	T	G	K	T	L	L	A	K	A	V	A	T	E	T	.	.	.	.	.	.	.	.	.	.	.	N	A	T	F	I	R	V	V
Template Known Secondary structure			G	G	G			S										T	T	T	T													T					S						S	S	S	S	S	S												T	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.												.	230	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.												.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	G	A	I	A	E	S	L	L	E	A	E	L	F	G	Y	E	E	G	A	F	T	G	S	R	R	G	G	R	A	G	L	F	E	I	A	H	G	G	T	L	F	L	D	E	I	G	E	M	.	.	.	.	.	.	.	.	.	.	.	P	L	P	L	Q	T	R	L	L	R	V	L	E	E	K	E	V	T	R	V
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.																																																														.	.	.	.	.	.
Template Sequence		G	S	E	.	.	.	.	.	.	.	.	.	.	L	V	K	K	F	I	G	E	G	A	S	L	V	K	D	I	F	K	L	A	K	E	K	A	P	S	I	I	F	I	D	E	I	D	A	I	A	A	K	R	T	D	A	L	T	G	G	D	R	E	V	Q	R	T	L	M	Q	L	L	A	E	.	.	.	.	.	.
Template Known Secondary structure		G	G	G	.	.	.	.	.	.	.	.	.	.	S				S	T	T	T	T	T													T		S								G	G	G	T	S	B			S	S	S				S	T														.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.																																																														.	.	.	.	.	.
Template SS confidence
		237	.	.											240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.				.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		G	G	H	Q	P	V	P	V	D	V	R	V	I	S	A	T	H	C	N	L	E	E	D	M	Q	Q	G	R	F	R	R	D	L	F	Y	R	.	.	.	L	S	I	L	R	L	Q	L	P	P	L	R	E	R	V	A	D	I	L	P	L	A	E	S	F	L	K	V	S	L	A	A	L	S	A	P	F	S	A	A	L
Query Conservation																																						.	.	.
Alig confidence																						.	.	.	.	.	.	.										.	.	.																	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Sequence		M	D	G	F	D	A	R	G	D	V	K	I	I	G	A	T	N	R	P	D	.	.	.	.	.	.	.	I	L	D	P	A	I	L	R	P	G	R	F	D	R	I	I	E	V	P	A	P	D	E	K	G	R	L	E	.	.	.	.	.	.	.	.	I	L	K	I	H	T	R	K	M	N	L	.	.	.	.	.	.
Template Known Secondary structure		T	T	S	S		S	S	S	S								S	S	G	G	.	.	.	.	.	.	.	G	B						S	T	T	S																		.	.	.	.	.	.	.	.					T	T	T	T	S		B	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320								.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.									.	350	.	.	.	.	.	.	.	.	.
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.		.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		R	Q	G	L	Q	A	S	E	T	V	L	L	H	Y	D	W	P	G	.	N	I	R	E	L	R	N	M	M	E	R	L	A	L	F	L
Query Conservation																				.
Alig confidence		.	.											.						.
Template Conservation		.	.											.
Template Sequence		.	.	A	E	D	V	N	L	E	E	I	A	.	K	M	T	E	G	C	V	G	A	E	L	K	A	I	C	T	E	A	G	M	N	A
Template Known Secondary structure		.	.		S	S								.	T	T	S	T	T
Template Predicted Secondary structure		.	.											.
Template SS confidence
				360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions