Job Description P77743 Confidence 99.10% Date Thu Jan 5 12:32:24 GMT 2012 Rank 57 Aligned Residues 192 % Identity 23% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.												.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	G	D	M	L	G	Q	S	P	Q	M	E	Q	V	R	Q	T	I	L	L	.	.	.	.	.	.	.	.	.	.	.	Y	A	R	S	S	A	A	V	L	I	E	G	E	T	G	T	G	K	E	L	A	A	Q	A	I	H	R	E	Y	F	A	R	H	D	A	R	Q	G	K	K	S	H	P	F	V	A	V	N
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	W	E	D	I	G	G	L	E	D	V	K	R	E	L	Q	E	L	V	Q	Y	P	V	E	H	P	D	K	F	L	K	F	G	M	T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	C	.	.	.	.	.	.	.	.	.	.	.	Q	A	N	F	I	S	I	K
Template Known Secondary structure			T	T	T	T		S																								T	S						S								T	T	S													T	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.												.	.	.	.	540	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.				320	.	.	.	.	.	.	.	.	.	330	.	.	.	.															.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																																							.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	G	A	I	A	E	S	L	L	E	A	E	L	F	G	Y	E	E	G	A	F	T	G	S	R	R	G	G	R	A	G	L	F	E	I	A	H	.	.	.	G	G	T	L	F	L	D	E	I	G	E	M	P	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	T	R	L	L	R	V	L	E	E
Query Conservation																																							.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	P	E	L	L	T	M	.	.	.	.	.	.	.	.	.	.	.	.	.	W	F	G	E	S	E	A	N	V	R	E	I	F	D	K	A	R	Q	A	A	P	C	V	L	F	F	D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	G
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T		T							T	T	T	T	T	T	T		S						S	S	G	G	G	G					T	T	T	T		S	S			S														S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		544	.	.	.	.	.	550														.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.			.	.	.		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure																																											.	.				.
Query SS confidence																																											.	.				.
Query Sequence		K	E	V	T	R	V	G	G	H	Q	P	V	P	V	D	V	R	V	I	S	A	T	H	C	N	L	E	E	D	M	Q	Q	G	R	F	R	R	D	L	F	Y	.	.	R	L	S	.	I	L	R	L	Q	L	P	P	L	R	E	R	V	A	D	I	L	P	L	A	E	S	F	L	K	V	S	L	A	A	L	S	A
Query Conservation																																											.	.				.
Alig confidence				.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.									.	.				.															.	.	.	.	.	.	.	.											.
Template Conservation				.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.											.
Template Sequence		M	S	.	.	.	.	.	.	.	.	.	T	K	K	N	V	F	I	I	G	A	T	N	R	P	D	.	.	.	.	.	.	.	I	I	D	P	A	I	L	R	P	G	R	L	D	Q	L	I	Y	I	P	L	P	D	E	K	S	R	V	A	.	.	.	.	.	.	.	.	I	L	K	A	N	L	R	K	S	P	.
Template Known Secondary structure		S		.	.	.	.	.	.	.	.	.	T	T	S	S								S		G	G	.	.	.	.	.	.	.	G			G	G	G	T	S	T	T	T	S											T	T					.	.	.	.	.	.	.	.						T	T	T	S		.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.											.
Template SS confidence
		611	.										.	.	.	.	.	.	.	620	.	.	.	.	.	.	.								.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.									.	.	.	.	660	.	.	.	.	.
		423	.	.	.	.	.	.	430	.	.	.	.	.		.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		P	F	S	A	A	L	R	Q	G	L	Q	A	S	.	E	T	V	L	L	H	Y	D	W	P	G	N	I	R	E	L	R	N	M	M	E	R	L	A	L	F	L
Query Conservation															.
Alig confidence		.	.	.	.	.	.	.	.						.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	V	A	K	D	V	D	L	E	F	L	A	K	M	T	N	G	F	S	G	A	D	L	T	E	I	C	Q	R	A	C	K	L	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	B		S	S							T	T	T		S	S															T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										666	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions