Job Description P77743 Confidence 99.61% Date Thu Jan 5 12:32:24 GMT 2012 Rank 28 Aligned Residues 227 % Identity 12% Template c2z4rB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa Resolution 3.05 Å

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		209	210	.	.	.	.	.	.	.		.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure											.						.
Query SS confidence											.						.
Query Sequence		L	R	T	R	Y	V	L	G	D	.	M	L	G	Q	S	.	P	Q	M	E	Q	V	R	Q	T	I	L	L	Y	A	R	S	S	A	A	V	L	I	E	G	E	T	G	T	G	K	E	L	A	A	Q	A	I	H	R	E	Y	F	A	R	H	D	A	R	Q	G	K	K	S	H	P	F	V	A	V	N	C	G	A	I
Query Conservation											.						.
Alig confidence											.						.																																												.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.
Template Sequence		L	N	P	D	Y	T	F	E	N	F	V	V	G	P	G	N	S	F	A	Y	H	A	A	L	E	V	A	K	H	P	G	R	Y	N	P	L	F	I	Y	G	G	V	G	L	G	K	T	H	L	L	Q	S	I	G	N	Y	V	V	Q	.	.	.	.	.	.	N	E	P	D	L	R	V	M	Y	I	T	S	E	K	F
Template Known Secondary structure				S	S		S	G	G	G					T	T	T													S	T	T	T	S								S	S	S	S	S															.	.	.	.	.	.		S	S	S	S
Template Predicted Secondary structure																																																													.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.							.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	S	L	L	E	A	E	L	F	G	Y	E	E	G	A	F	T	G	S	R	R	G	G	R	A	G	L	F	E	I	A	H	G	G	T	L	F	L	D	E	I	G	E	M	P	L	P	L	Q	T	R	L	L	R	V	L	E	E	K	E	V	T	R	V	G	G	H	Q	P	V	P	V	D	V	R	V	I	S	A
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.
Template Sequence		L	N	D	L	V	D	S	M	K	E	G	K	L	N	.	.	.	.	.	.	.	.	.	.	E	F	R	E	K	Y	R	K	K	V	D	I	L	L	I	D	D	V	Q	F	L	I	G	K	T	G	V	Q	T	E	L	F	H	T	F	N	E	L	H	D	S	G	K	.	.	.	.	.	.	.	.	Q	I	V	I	C
Template Known Secondary structure											T	S				.	.	.	.	.	.	.	.	.	.							T	T	T		S							G	G	G	G	T	T																	T	T	T		.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.											.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.									.	230	.	.	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	H	C	N	L	E	E	D	M	Q	Q	G	R	F	R	R	D	L	F	Y	R	L	S	I	L	R	L	Q	L	P	P	L	R	E	R	V	A	D	I	L	P	L	A	E	S	F	L	K	V	S	L	A	A	L	S	A	P	F	S	A	A	L	R	Q	G	L	Q	A	S	E	T	V	L	L	H	Y	D	W	P	G
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.													.	.	.	.	.	.	.													.
Template Conservation																																							.	.	.	.	.	.	.	.													.	.	.	.	.	.	.													.
Template Sequence		S	D	R	E	P	Q	K	L	S	E	F	Q	D	R	L	V	S	R	F	Q	M	G	L	V	A	K	L	E	P	P	D	E	E	T	R	K	S	.	.	.	.	.	.	.	.	I	A	R	K	M	L	E	I	E	H	G	E	.	.	.	.	.	.	.	L	P	E	E	V	L	N	F	V	A	E	N	.	V	D	D
Template Known Secondary structure			S	S		T	T	T		S	S											S	S																.	.	.	.	.	.	.	.										T			.	.	.	.	.	.	.			T	T									.			S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.													.	.	.	.	.	.	.													.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270									.	.	.	.	.	.	.	.	.	280	.	.								.	.	.	.	.	.	.	290	.	.	.	.		.	.	.
		447	.	.	450	.	.	.	.	.	.	.	.	.	460			.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		N	I	R	E	L	R	N	M	M	E	R	L	A	L	.	.	F	L	S	V	E	P	T	P	D	L	T	P	Q	F	M
Query Conservation																.	.
Alig confidence																.	.
Template Conservation
Template Sequence		N	L	R	R	L	R	G	A	I	I	K	L	L	V	Y	K	E	T	T	G	K	E	V	D	L	K	E	A	I	L	L
Template Known Secondary structure																				S	S	S
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions