Job Description P77743 Confidence 98.72% Date Thu Jan 5 12:32:24 GMT 2012 Rank 92 Aligned Residues 200 % Identity 16% Template c2x8aA_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain Resolution 2.60 Å

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		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.												.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	L	G	Q	S	P	Q	M	E	Q	V	R	Q	T	I	L	L	Y	A	R	S	.	.	.	.	.	.	.	.	.	.	.	S	A	A	V	L	I	E	G	E	T	G	T	G	K	E	L	A	A	Q	A	I	H	R	E	Y	F	A	R	H	D	A	R	Q	G	K	K	S	H	P	F	V	A	V	N	C	G	A	I
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	G	A	L	E	D	I	R	E	E	L	T	M	A	I	L	A	P	V	R	N	P	D	Q	F	K	A	L	G	L	V	T	P	A	G	V	L	L	A	G	P	P	G	C	G	K	T	L	L	A	K	A	V	A	N	E	S	.	.	.	.	.	.	.	.	.	.	.	G	L	N	F	I	S	V	K	G	P	E	L
Template Known Secondary structure																	T					S							T	T					S						S	S	T	T	S													T	.	.	.	.	.	.	.	.	.	.	.	T								T	T	T	T
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.												640	.	.	.	.	.	.	.	.	.	650	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	S	L	L	E	A	E	L	F	G	Y	E	E	G	A	F	T	G	S	R	R	G	G	R	A	G	L	F	E	I	A	H	G	G	T	L	F	L	D	E	I	G	E	M	P	L	P	L	Q	T	R	L	L	R	V	L	E	E	K	E	V	T	R	V	G	G	H	Q	P	V	P	V	D	V	R	V	I	S	A
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.
Template Sequence		L	N	M	Y	V	G	E	S	E	.	.	.	.	.	.	.	.	.	.	R	A	V	R	Q	V	F	Q	R	A	K	N	S	A	P	C	V	I	F	F	D	E	V	D	A	L	C	P	S	V	R	V	V	N	Q	L	L	T	E	M	.	.	.	.	.	.	.	D	G	L	E	A	R	Q	Q	V	F	I	M	A	A
Template Known Secondary structure			S	S	T	T					.	.	.	.	.	.	.	.	.	.													T		S							T		T	T	T				T	T										.	.	.	.	.	.	.		T			S	T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.
Template SS confidence
		652	.	.	.	.	.	.	.	660											.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700								.	.	.	.	.	.	.	.	.	710	.	.	.	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390		.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		T	H	C	N	L	E	E	D	M	Q	Q	G	R	F	R	R	D	L	F	Y	R	L	S	I	.	L	R	L	Q	L	P	P	L	R	E	R	V	A	D	I	L	P	L	A	E	S	F	L	K	V	S	L	A	A	L	S	A	P	F	S	A	A	L	R	Q	G	L	Q	A	S	E	T	V	L	L	H	Y	D	W	P
Query Conservation																										.
Alig confidence							.	.	.	.	.	.	.													.													.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Sequence		T	N	R	P	D	.	.	.	.	.	.	.	I	I	D	P	A	I	L	R	P	G	R	L	D	K	T	L	F	V	G	L	P	P	P	A	D	.	.	.	.	.	.	.	.	.	.	R	L	A	I	L	K	T	I	T	K	N	G	T	K	P	P	L	D	A	D	V	N	L	E	A	I	A	G	D	L	R	C	D
Template Known Secondary structure			S		G	G	.	.	.	.	.	.	.	G	S						S	T	T	S	S								S						.	.	.	.	.	.	.	.	.	.									T	T	T	T	B	T	T	B	B		T	T								T		S	G	G	G
Template Predicted Secondary structure							.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		724	.	.	.	.								.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.											.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.
		446		.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		G	.	N	I	R	E	L	R	N	M	M	E	R	L	A	L	F	L
Query Conservation			.
Alig confidence			.
Template Conservation
Template Sequence		C	Y	T	G	A	D	L	S	A	L	V	R	E	A	S	I	C	A
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		787	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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