Job Description P77743 Confidence 98.99% Date Thu Jan 5 12:32:24 GMT 2012 Rank 74 Aligned Residues 229 % Identity 15% Template c2qbyB_ PDB info PDB header:replication/dna Chain: B: PDB Molecule:cell division control protein 6 homolog 3; PDBTitle: crystal structure of a heterodimer of cdc6/orc1 initiators2 bound to origin dna (from s. solfataricus) Resolution 3.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.
Predicted Secondary structure																																.	.																																														.	.
Query SS confidence																																.	.																																														.	.
Query Sequence		R	Y	V	L	G	D	M	L	G	Q	S	P	Q	M	E	Q	V	R	Q	T	I	L	L	Y	A	R	S	S	A	A	.	.	V	L	I	E	G	E	T	G	T	G	K	E	L	A	A	Q	A	I	H	R	E	Y	F	A	R	H	D	A	R	Q	G	K	K	S	H	P	F	V	A	V	N	C	G	A	I	.	.	A
Query Conservation																																.	.																																														.	.
Alig confidence																																.	.																																														.	.
Template Conservation
Template Sequence		L	S	V	F	K	E	I	P	F	R	E	D	I	L	R	D	A	A	I	A	I	R	Y	F	V	K	N	E	V	K	F	S	N	L	F	L	G	L	T	G	T	G	K	T	F	V	S	K	Y	I	F	N	E	I	E	E	V	K	K	E	D	E	E	Y	K	D	V	K	Q	A	Y	V	N	C	R	E	V	G	G	T
Template Known Secondary structure						S	S		T	T																	T	T												T	T	S	S																			S	S	S	S	T	T													S
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.							.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																															.	.	.	.	.	.															.
Query SS confidence																															.	.	.	.	.	.															.
Query Sequence		E	S	L	L	E	A	E	L	F	G	Y	E	E	G	A	F	T	G	S	R	R	G	G	R	A	G	L	F	E	.	.	.	.	.	.	I	A	H	G	G	T	L	F	L	D	E	I	G	E	.	M	P	L	P	L	Q	T	R	L	L	R	V	L	E	E	K	E	V	T	R	V	G	G	H	Q	P	V	P	V	D
Query Conservation																															.	.	.	.	.	.															.
Alig confidence																															.	.	.	.	.	.															.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Q	A	V	L	S	S	L	A	G	K	L	T	G	F	S	V	P	K	H	G	I	N	L	G	E	Y	I	D	K	I	K	N	G	T	R	N	I	R	A	I	I	Y	L	D	E	V	D	T	L	V	K	R	R	G	G	D	I	V	L	Y	Q	L	L	R	.	.	.	.	.	.	.	.	.	.	.	S	D	A	N
Template Known Secondary structure																S				S	S	S	S		T												S	S	S								T	T						S	T	T	S									T	.	.	.	.	.	.	.	.	.	.	.	S	S	S
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170												.	.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		V	R	V	I	S	A	T	H	C	N	L	E	E	D	M	Q	Q	G	R	F	R	R	D	L	F	Y	R	L	S	I	L	R	L	Q	L	P	P	L	R	E	R	V	A	D	I	L	P	L	A	E	S	F	L	K	V	S	L	A	A	L	S	A	P	F	S	A	A	L	R	Q	G	L	Q	A	S	E	T	V	L	.
Query Conservation																																																																																	.
Alig confidence													.	.	.	.															.											.	.																				.	.	.	.	.	.	.	.	.										.
Template Conservation													.	.	.	.															.											.	.																				.	.	.	.	.	.	.	.	.
Template Sequence		I	S	V	I	M	I	S	N	D	I	N	.	.	.	.	V	R	D	Y	M	E	P	R	V	L	S	S	L	G	.	P	S	V	I	F	K	P	Y	D	A	.	.	E	Q	L	K	F	I	L	S	K	Y	A	E	Y	G	L	I	K	G	T	.	.	.	.	.	.	.	.	.	Y	D	D	E	I	L	S	Y	I	A
Template Known Secondary structure									S	S	T	T	.	.	.	.	T	T	T	T	S							T			.											.	.														T	S		T	T	S	.	.	.	.	.	.	.	.	.			S
Template Predicted Secondary structure													.	.	.	.															.											.	.																				.	.	.	.	.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.										.	230	.	.	.	.	.	.	.	.
			440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	L	H	Y	D	W	P	G	N	I	R	E	L	R	N	M	M	E	R	L	A	L	F	L	S	V	E	P	T
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		A	I	S	A	K	E	H	G	D	A	R	K	A	V	N	L	L	F	R	A	A	Q	L	A	S	G	G	G	I
Template Known Secondary structure						T	T																		T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions