Job Description P77743 Confidence 99.72% Date Thu Jan 5 12:32:24 GMT 2012 Rank 22 Aligned Residues 207 % Identity 18% Template c2hcbC_ PDB info PDB header:replication Chain: C: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of amppcp-bound dnaa from aquifex aeolicus Resolution 3.51 Å

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		209	210	.	.	.	.	.	.	.		.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure											.						.	.
Query SS confidence											.						.	.
Query Sequence		L	R	T	R	Y	V	L	G	D	.	M	L	G	Q	S	.	.	P	Q	M	E	Q	V	R	Q	T	I	L	L	Y	A	R	S	S	A	A	V	L	I	E	G	E	T	G	T	G	K	E	L	A	A	Q	A	I	H	R	E	Y	F	A	R	H	D	A	R	Q	G	K	K	S	H	P	F	V	A	V	N	C	G	A
Query Conservation											.						.	.
Alig confidence											.						.	.																																										.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.
Template Sequence		L	N	P	K	Y	T	L	E	N	F	I	V	G	E	G	N	R	L	A	Y	E	V	V	K	E	A	L	E	N	L	G	S	L	Y	N	P	I	F	I	Y	G	S	V	G	T	G	K	T	H	L	L	Q	A	A	G	N	E	A	.	.	.	.	.	.	.	.	K	K	R	G	Y	R	V	I	Y	S	S	A	D	D
Template Known Secondary structure				T	T			S	S	S	S				T	T	T										T	T	T	T	T	T	T	S									S	S	S	S	S													.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.									.	.	.	140	.	.	.	.	.	.	.	.	.	150
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	E	S	L	L	E	A	E	L	F	G	Y	E	E	G	A	F	T	G	S	R	R	G	G	R	A	G	L	F	E	I	A	H	G	G	T	L	F	L	D	E	I	G	E	M	P	L	P	L	Q	T	R	L	L	R	V	L	E	E	K	E	V	T	R	V	G	G	H	Q	P	V	P	V	D	V	R	V	I	S
Query Conservation
Alig confidence		.	.	.	.	.																				.	.	.	.	.	.																																							.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																				.	.	.	.	.	.																																							.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	F	A	Q	A	M	V	E	H	L	K	K	G	T	I	N	E	F	R	N	.	.	.	.	.	.	M	Y	K	S	V	D	L	L	L	L	D	D	V	Q	F	L	S	G	K	E	R	T	Q	I	E	F	F	H	I	F	N	T	L	Y	L	L	E	K	.	.	.	.	.	.	.	.	Q	I	I	L
Template Known Secondary structure		.	.	.	.	.												T								.	.	.	.	.	.				T		S							G	G	G	G	T	T		S																T	T		.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.																				.	.	.	.	.	.																																							.	.	.	.	.	.	.	.
Template SS confidence
							151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.							170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.									.	.	210	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.			.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		A	T	H	C	N	L	E	E	D	M	Q	Q	G	R	F	R	R	D	L	F	Y	R	L	S	I	L	R	L	Q	L	.	.	P	P	L	R	E	R	V	A	D	I	L	P	L	A	E	S	F	L	K	V	S	L	A	A	L	S	A	P	F	S	A	A	L	R	Q	G	L	Q	A	S	E	T	V	L	L	H	Y	D
Query Conservation																																.	.
Alig confidence											.	.	.																			.	.									.	.	.	.	.	.	.	.													.	.	.	.	.	.	.													.
Template Conservation											.	.	.																													.	.	.	.	.	.	.	.													.	.	.	.	.	.	.													.
Template Sequence		A	S	D	R	H	P	Q	K	L	.	.	.	D	G	V	S	D	R	L	V	S	R	F	E	G	G	I	L	V	E	I	E	L	D	N	K	T	R	F	K	.	.	.	.	.	.	.	.	I	I	K	E	K	L	K	E	F	N	L	E	.	.	.	.	.	.	.	L	R	K	E	V	I	D	Y	L	L	E	N	.
Template Known Secondary structure				S	S		G	G	G		.	.	.	T	T	S											S									S						.	.	.	.	.	.	.	.									T	T			.	.	.	.	.	.	.													.
Template Predicted Secondary structure											.	.	.																													.	.	.	.	.	.	.	.													.	.	.	.	.	.	.													.
Template SS confidence
		212	.	.	.	.	.	.	.	220				.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.									.	250	.	.	.	.	.	.	.	.	.	260								.	.	.	.	.	.	.	.	.	270	.	.
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	P	G	N	I	R	E	L	R	N	M	M	E	R	L	A	L	F	L
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	T	K	N	V	R	E	I	E	G	K	I	K	L	I	K	L	K	G
Template Known Secondary structure		.			S												T	T	S
Template Predicted Secondary structure		.
Template SS confidence
			273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions