Job Description P77743 Confidence 93.09% Date Thu Jan 5 12:32:24 GMT 2012 Rank 176 Aligned Residues 153 % Identity 13% Template c2gxaA_ PDB info PDB header:replication/dna Chain: A: PDB Molecule:replication protein e1; PDBTitle: crystal structure of papillomavirus e1 hexameric helicase2 with ssdna and mgadp Resolution 3.15 Å

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		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.															.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Query Sequence		Q	A	F	S	D	A	L	D	M	T	R	M	S	L	R	H	N	T	H	D	A	T	R	N	A	L	R	T	R	Y	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	D	M	L	G	Q	S	.	P	Q	M	E	Q	V	R	Q	T	I	L	L	Y	A	R	S	S	A	A	V	L	I	E	G	E	T
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation
Template Sequence		K	H	V	K	D	C	A	T	M	V	R	H	Y	L	R	A	E	T	Q	A	L	S	M	P	A	Y	I	K	A	R	C	K	L	A	T	G	E	G	S	W	K	S	I	L	T	F	F	N	Y	Q	N	I	E	L	I	T	F	I	N	A	L	K	L	W	L	K	G	I	P	K	K	N	C	L	A	F	I	G	P	P
Template Known Secondary structure																						S															S														T	T															T	T		T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	G	K	E	L	A	A	Q	A	I	H	R	E	Y	F	A	R	H	D	A	R	Q	G	K	K	S	H	P	F	V	A	V	N	C	G	A	I	A	E	S	L	L	E	A	E	L	F	G	Y	E	E	G	A	F	T	G	S	R	R	G	G	R	A	G	L	F	E	I	A	H	G	G	T	L	F	L	D	E	I
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	T	G	K	S	M	L	C	N	S	L	I	H	F	L	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	L	S	F	A	N	H	K	S	H	F	W	L	A	S	L	A	D	T	R	A	A	L	V	D	D	A
Template Known Secondary structure		S	S	S												T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	S		T	T	S		T	T	S	G	G	G	T		S						S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.																																				.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.				.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		G	E	M	P	L	P	L	Q	T	R	L	L	R	V	L	E	E	K	E	V	T	R	V	.	.	.	G	G	H	Q	P	V	P	V	D	V	R	V	I	S	A	T	H	C	N	L
Query Conservation																									.	.	.
Alig confidence																									.	.	.
Template Conservation
Template Sequence		T	H	A	C	W	R	Y	F	D	T	Y	L	R	N	A	L	D	G	Y	P	V	S	I	D	R	K	H	K	A	A	V	Q	I	K	A	P	P	L	L	V	T	S	N	I	D	V
Template Known Secondary structure												T	T						S	S							S	S	S															S	S		T
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions