Job Description P77743 Confidence 95.69% Date Thu Jan 5 12:32:24 GMT 2012 Rank 117 Aligned Residues 231 % Identity 18% Template c1xxiF_ PDB info PDB header:transferase Chain: F: PDB Molecule:dna polymerase iii, delta subunit; PDBTitle: adp bound e. coli clamp loader complex Resolution 4.10 Å

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		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.							.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.
Query Sequence		V	L	I	E	G	E	T	G	T	G	K	E	L	A	A	Q	A	I	H	R	E	Y	F	A	R	H	D	A	R	Q	G	K	K	S	H	P	F	V	A	V	N	C	G	A	I	A	.	.	.	.	.	.	E	S	L	L	E	A	E	L	F	G	Y	E	E	G	A	F	T	G	S	R	R	G	G	R	A	G	L	F
Query Conservation																																																.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.																	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	L	L	L	G	N	D	P	L	L	L	Q	E	S	Q	D	A	V	R	Q	V	A	A	.	.	.	.	.	.	.	A	Q	G	F	E	E	H	H	T	F	S	I	D	P	N	T	D	W	N	A	I	F	S	L	C	Q	A	M	S	L	F	A	S	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S																		.	.	.	.	.	.	.			T										S	S																	S		S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.								.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	A	H	G	G	T	L	F	L	D	E	I	G	E	M	P	L	P	L	Q	T	R	L	L	R	V	L	E	E	K	E	V	T	R	V	G	G	H	Q	P	V	P	V	D	V	R	V	I	S	A	T	H	C	N	L	E	E	D	M	Q	Q	G	R	F	R	R	D	L	F	Y	R	L	S	I	L	R	L	Q	L
Query Conservation
Alig confidence		.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation		.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Sequence		.	.	.	.	.	.	T	L	L	L	L	L	P	E	N	G	P	N	A	A	I	N	E	Q	L	L	T	L	T	G	.	.	.	.	.	.	.	.	.	.	L	L	H	D	D	L	L	L	I	V	R	G	N	K	L	.	.	.	.	.	S	K	A	Q	E	N	A	A	W	F	T	A	L	A	N	R	S	V	Q	V
Template Known Secondary structure		.	.	.	.	.	.								S	S		S		T	T										T	.	.	.	.	.	.	.	.	.	.	T			S	S								S			.	.	.	.	.		T	T	T	T	T	S							T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template SS confidence
								79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.											.	.	.	.	.	.	.	110	.	.	.	.	.	.	.						.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		P	P	L	R	E	R	V	A	D	I	L	P	L	A	E	S	F	L	K	V	S	L	A	A	L	S	A	P	F	S	A	A	L	R	Q	G	L	Q	A	S	E	T	V	L	L	H	Y	D	W	P	G	N	I	R	E	L	R	N	M	M	E	R	L	A	L	F	L	S	V	E	P	T	P	D	L	T	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence															.	.	.	.												.	.	.	.	.	.	.														.																												.	.	.	.
Template Conservation															.	.	.	.												.	.	.	.	.	.	.														.
Template Sequence		T	C	Q	T	P	E	Q	A	Q	L	P	R	W	.	.	.	.	V	A	A	R	A	K	Q	L	N	L	E	.	.	.	.	.	.	.	L	D	D	A	A	N	Q	V	L	C	Y	C	Y	.	E	G	N	L	L	A	L	A	Q	A	L	E	R	L	S	L	L	W	P	D	G	K	L	T	L	P	R	V	E	Q	A
Template Known Secondary structure								T	T						.	.	.	.								T	T			.	.	.	.	.	.	.												S	S	.	T	T																	T	T
Template Predicted Secondary structure															.	.	.	.												.	.	.	.	.	.	.														.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150					.	.	.	.	.	.	.	.	.	160	.								.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
																													472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	F	M	Q	L	L	L	P	E	L	A	R	E	S	A	K	T	P	A	P	R	L	L	T	P	Q	Q	A	L	E	K	F	N	G	D	K	T	A	A	A	N	Y	L	G	I	S	R	T	T	F	W	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	N	D	A	A	H	F	T	P	F	H	W	V	D	A	L	L	M	G	K	S	K	R	A	L	H	I	L	Q	Q	L	R	L	E	G	S	E	P	V	I	L	L	R	T	L	Q	R	E	L	L	L	L	V	N	L	K	R	Q	S	A	H	T	P	L	R	A	L	F	D	K	H	R	V	W	Q	N	R	R	G	M
Template Known Secondary structure																		T	T	S										T	S	S	T	T	T	T																						T		S	S	S	S										T			S	S
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		525	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	G	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		286	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions