Job Description P77743 Confidence 99.25% Date Thu Jan 5 12:32:24 GMT 2012 Rank 47 Aligned Residues 196 % Identity 21% Template c1xwiA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:skd1 protein; PDBTitle: crystal structure of vps4b Resolution 2.80 Å

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		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.											.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	G	D	M	L	G	Q	S	P	Q	M	E	Q	V	R	Q	T	I	L	L	Y	.	.	.	.	.	.	.	.	.	.	A	R	S	S	A	A	V	L	I	E	G	E	T	G	T	G	K	E	L	A	A	Q	A	I	H	R	E	Y	F	A	R	H	D	A	R	Q	G	K	K	S	H	P	F	V	A	V	N	C
Query Conservation																								.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.
Template Sequence		K	W	S	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	.	.	.	.	.	.	.	.	N	N	S	T	F	F	S	I	S	S
Template Known Secondary structure			G	G	G	S		S																			G	G	G	S		T	T					S						S	S	S	S	S													T	.	.	.	.	.	.	.	.	.	.	T	S
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.											.	.	.	.	.	.	.	.	200	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.				320	.	.	.	.	.	.	.	.	.	330	.												.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	I	A	E	S	L	L	E	A	E	L	F	G	Y	E	E	G	A	F	T	G	S	R	R	G	G	R	A	G	L	F	E	I	A	H	.	.	.	G	G	T	L	F	L	D	E	I	G	E	M	.	.	.	.	.	.	.	.	.	.	.	P	L	P	L	Q	T	R	L	L	R	V	L	E	E	K	E	V	T
Query Conservation																																						.	.	.													.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.													.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.
Template Sequence		S	D	L	V	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	W	L	G	E	S	E	K	L	V	K	N	L	F	Q	L	A	R	E	N	K	P	S	I	I	F	I	D	E	I	D	S	L	C	G	S	R	S	E	N	E	S	E	A	A	R	R	I	K	T	E	F	L	V	Q	M	Q	G	V	G	.	.
Template Known Secondary structure			S	S			S	.	.	.	.	.	.	.	.	.	.	.	.	.	S			S															T	S	S							T	T	T	G	G	G			S	S	S			T	T																S	S	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.
Template SS confidence
		202	.	.	.	.	.														.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		R	V	G	G	H	Q	P	V	P	V	D	V	R	V	I	S	A	T	H	C	N	L	E	E	D	M	Q	Q	G	R	F	R	R	D	L	F	Y	R	L	S	.	I	L	R	L	Q	L	P	P	L	R	E	R	V	A	D	I	L	P	L	A	E	S	F	L	K	V	S	L	A	A	L	S	A	P	F	S	A	A	L
Query Conservation																																										.
Alig confidence		.	.	.	.	.	.																	.	.	.	.	.	.	.												.															.	.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation		.	.	.	.	.	.																	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.													.	.	.	.	.
Template Sequence		.	.	.	.	.	.	V	D	N	D	G	I	L	V	L	G	A	T	N	I	P	W	.	.	.	.	.	.	.	V	L	D	S	A	I	R	R	R	F	E	K	R	I	Y	I	P	L	P	E	P	H	A	R	A	A	.	.	.	.	.	.	.	.	M	F	K	L	H	L	G	T	T	Q	N	S	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	S			T	T								S		T	T	.	.	.	.	.	.	.	T	S							T																		.	.	.	.	.	.	.	.							T	T			B		.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.																	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.													.	.	.	.	.
Template SS confidence
								267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.								.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.									.	310	.	.	.	.	.	.	.	.	.	320
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	G	L	Q	A	S	E	T	V	L	L	H	Y	D	W	P	G	N	I	R	E	L	R	N	M	M	E	R	L	A	L	F	L
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	L	T	E	A	D	F	R	E	L	G	R	K	T	D	G	Y	S	G	A	D	I	S	I	I	V	R	D	A	L	M	Q	P
Template Known Secondary structure		.	.												T		T	T															T
Template Predicted Secondary structure		.	.
Template SS confidence
				321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions