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Job DescriptionP77743
Confidence98.26%DateThu Jan 5 12:32:24 GMT 2012
Rank98Aligned Residues278
% Identity13%Templatec1w5sB_
PDB info PDB header:replicationChain: B: PDB Molecule:origin recognition complex subunit 2 orc2; PDBTitle: structure of the aeropyrum pernix orc2 protein (adp form)
Resolution2.4 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  RNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA. . . . . . . VLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPF
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Template Sequence  RRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAK. . EGLTVKQ
Template Known Secondary structure  GGGGSTT


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Query Sequence  VAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE. . . . . . . . IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR
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Template Sequence  AYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHE
Template Known Secondary structure  GGG

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   351........360.........370.........380.........390.........400.........410.........420.........430
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Query Sequence  VGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQ
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Template Sequence  EIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYT. . . . . . . . ILEQRAELGLRDTVWEPRH
Template Known Secondary structure  S

TTS
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GGG

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   170.........180.........190.........200.........210.........220.. .......230.........240.
 
   431........440.........450.........460.........470.........480.........490...
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Query Sequence  GLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPR
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Template Sequence  LELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELE
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GGGTS


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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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