Job Description P77743 Confidence 98.80% Date Thu Jan 5 12:32:24 GMT 2012 Rank 88 Aligned Residues 196 % Identity 16% Template c1sxjE_ PDB info PDB header:replication Chain: E: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	G	D	M	L	G	Q	S	P	Q	M	E	Q	V	R	Q	T	I	L	L	Y	A	R	S	S	A	A	V	L	I	E	G	E	T	G	T	G	K	E	L	A	A	Q	A	I	H	R	E	Y	F	A	R	H	D	A	R	Q	G	K	K	S	H	P	F	V	A	V	N	C	G	A	I	A	E	S	L	L	E	A
Query Conservation
Alig confidence																							.
Template Conservation																							.
Template Sequence		S	L	N	A	L	S	H	N	E	E	L	T	N	F	L	K	S	L	S	D	Q	.	P	R	D	L	P	H	L	L	L	Y	G	P	N	G	T	G	K	K	T	R	C	M	A	L	L	E	S	I	F	G	P	G	V	Y	R	N	V	V	S	S	P	Y	H	L	E	I	T	P	S	N	D	R	I	V	I	Q	E	L
Template Known Secondary structure		S	G	G	G			S										T	T	T	T		.	T	T										S	T	T	S	S							T						S		T	T									S	S
Template Predicted Secondary structure																							.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	F	G	Y	E	E	G	A	F	T	G	S	R	R	G	G	R	A	G	L	F	E	I	A	H	G	G	T	L	F	L	D	E	I	G	E	M	P	L	P	L	Q	T	R	L	L	R	V	L	E	E	K	E	V	T	R	V	G	G	H	Q	P	V	P	V	D	V	R	V	I	S	A	T	H	C	N	L	E	E
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.																.	.
Template Sequence		L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	A	Q	M	E	Q	R	Y	K	C	V	I	I	N	E	A	N	S	L	T	K	D	A	Q	A	A	L	R	R	T	M	E	K	.	.	.	.	.	.	.	.	.	.	.	Y	S	K	N	I	R	L	I	M	V	C	D	S	M	S	.	.
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	T	T											T	T	S	S															.	.	.	.	.	.	.	.	.	.	.	S	T	T	T								S		S		.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.																.	.
Template SS confidence
		113	.																	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.												.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	Q	Q	G	R	F	R	R	D	L	F	Y	R	L	S	I	L	R	L	Q	L	P	P	L	R	E	R	V	A	D	I	L	P	L	A	E	S	F	L	K	V	S	L	A	A	L	S	A	P	F	S	A	A	L	R	Q	G	L	Q	A	S	E	T	V	L	L	H	Y	D	W	P	G	N	I	R	E	L	R	N
Query Conservation
Alig confidence		.	.	.	.	.																										.	.	.	.	.	.	.	.														.	.	.	.	.	.														.
Template Conservation		.	.	.	.	.																										.	.	.	.	.	.	.	.														.	.	.	.	.	.														.
Template Sequence		.	.	.	.	.	P	I	I	A	P	I	K	S	Q	C	L	L	I	R	C	P	A	P	S	D	S	E	I	S	T	.	.	.	.	.	.	.	.	I	L	S	D	V	V	T	N	E	R	I	Q	L	.	.	.	.	.	.	E	T	K	D	I	L	K	R	I	A	Q	A	S	.	N	G	N	L	R	V	S	L	L
Template Known Secondary structure		.	.	.	.	.	S	S						T	T	S																.	.	.	.	.	.	.	.										T				.	.	.	.	.	.			S											.	T	T
Template Predicted Secondary structure		.	.	.	.	.																										.	.	.	.	.	.	.	.														.	.	.	.	.	.														.
Template SS confidence
							176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200									.	.	.	.	.	.	.	.	.	210	.	.	.							.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.
		454	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	M	E	R	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	L	E	S	M	A
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions