Job Description P77743 Confidence 99.09% Date Thu Jan 5 12:32:24 GMT 2012 Rank 58 Aligned Residues 207 % Identity 15% Template c1sxjD_ PDB info PDB header:replication Chain: D: PDB Molecule:activator 1 41 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	G	D	M	L	G	Q	S	P	Q	M	E	Q	V	R	Q	T	I	L	L	Y	A	R	S	S	A	A	V	L	I	E	G	E	T	G	T	G	K	E	L	A	A	Q	A	I	H	R	E	Y	F	A	R	H	D	A	R	Q	G	K	K	S	H	P	F	V	A	V	N	C	G	A	I	A	E	S	L	L	E	A
Query Conservation
Alig confidence																						.	.																																			.	.	.	.
Template Conservation																						.	.																																			.	.	.	.
Template Sequence		N	L	D	E	V	T	A	Q	D	H	A	V	T	V	L	K	K	T	L	K	.	.	S	A	N	L	P	H	M	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	L	A	L	T	K	E	L	Y	G	P	D	L	M	.	.	.	.	K	S	R	I	L	E	L	N	A	S	D	E	R	G	I	S	I	V	R	E
Template Known Secondary structure		S	T	T	T			S			T	T								T	T	.	.		T	T									S	T	T	S	S																			.	.	.	.	T	T	S						S	S	S								T	T
Template Predicted Secondary structure																						.	.																																			.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.					.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	F	G	Y	E	E	G	A	F	T	G	S	R	R	G	G	R	A	G	L	F	E	I	A	H	G	G	T	L	F	L	D	E	I	G	E	M	P	L	P	L	Q	T	R	L	L	R	V	L	E	E	K	E	V	T	R	V	G	G	H	Q	P	V	P	V	D	V	R	V	I	S	A	T	H	C	N	L	E	E
Query Conservation
Alig confidence																		.																																				.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation																		.																																				.	.	.	.	.	.	.	.	.	.	.																.	.
Template Sequence		K	V	K	N	F	A	R	L	T	V	S	K	P	S	K	H	.	D	L	E	N	Y	P	C	P	P	Y	K	I	I	I	L	D	E	A	D	S	M	T	A	D	A	Q	S	A	L	R	R	T	M	E	T	.	.	.	.	.	.	.	.	.	.	.	Y	S	G	V	T	R	F	C	L	I	C	N	Y	V	T	.	.
Template Known Secondary structure									S							T	T	.					S				S							T	T	G	G	G	S															.	.	.	.	.	.	.	.	.	.	.	T	T	T	T								S		G	G	.	.
Template Predicted Secondary structure																		.																																				.	.	.	.	.	.	.	.	.	.	.																.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.												160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	Q	Q	G	R	F	R	R	D	L	F	Y	R	L	S	I	L	R	L	Q	L	P	P	L	R	E	R	V	A	D	I	L	P	L	A	E	S	F	L	K	V	S	L	A	A	L	S	A	P	F	S	A	A	L	R	Q	G	L	Q	A	S	E	T	V	L	L	H	Y	D	W	P	G	N	I	R	E	L	R	N
Query Conservation
Alig confidence		.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation		.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Sequence		.	.	.	.	.	R	I	I	D	P	L	A	S	Q	C	S	K	F	R	F	K	A	L	D	A	S	N	A	I	D	R	L	R	F	I	S	E	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	K	C	D	D	G	V	L	E	R	I	L	D	I	S	.	A	G	D	L	R	R	G	I	T
Template Known Secondary structure		.	.	.	.	.	G	S								S																							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T															T	.	S	S
Template Predicted Secondary structure		.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template SS confidence
							175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.																.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.
		454	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	M	E	R	L	A	L	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	Q	S	A	S	K	G
Template Known Secondary structure						T
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions