Job Description P77743 Confidence 98.87% Date Thu Jan 5 12:32:24 GMT 2012 Rank 83 Aligned Residues 226 % Identity 20% Template c1s3sA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c Resolution 2.90 Å

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		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.												.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	G	D	M	L	G	Q	S	P	Q	M	E	Q	V	R	Q	T	I	L	L	.	.	.	.	.	.	.	.	.	.	.	Y	A	R	S	S	A	A	V	L	I	E	G	E	T	G	T	G	K	E	L	A	A	Q	A	I	H	R	E	Y	F	A	R	H	D	A	R	Q	G	K	K	S	H	P	F	V	A	V	N
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	Y	D	D	V	G	G	C	R	K	Q	L	A	Q	I	K	E	M	V	E	L	P	L	R	H	P	A	L	F	K	A	I	G	V	K	P	P	R	G	I	L	L	Y	G	P	P	G	T	G	K	T	L	I	A	R	A	V	A	N	E	T	.	.	.	.	.	.	.	.	.	.	.	G	A	F	F	F	L	I	N
Template Known Secondary structure			G	G	G			S																			T	T																		S	T	T	S	S													.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.												.	.	.	.	.	.	.	270
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330	.												.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	G	A	I	A	E	S	L	L	E	A	E	L	F	G	Y	E	E	G	A	F	T	G	S	R	R	G	G	R	A	G	L	F	E	I	A	.	.	.	H	G	G	T	L	F	L	D	E	I	G	E	M	.	.	.	.	.	.	.	.	.	.	.	P	L	P	L	Q	T	R	L	L	R	V	L	E	E	K	E	V
Query Conservation																																						.	.	.														.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.														.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.																																																															.
Template Sequence		G	P	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	M	S	K	L	A	G	E	S	E	S	N	L	R	K	A	F	E	E	A	E	K	N	A	P	A	I	I	F	I	D	E	L	D	A	I	A	P	K	R	E	K	T	H	G	E	V	E	R	R	I	V	S	Q	L	L	T	L	M	D	G	L	K	.
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.		T	S		T	T																T		S							T	G	G	G	T				S	S	S				T	T																	.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.																																																															.
Template SS confidence
		271	.	.	.														.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.				.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		T	R	V	G	G	H	Q	P	V	P	V	D	V	R	V	I	S	A	T	H	C	N	L	E	.	.	.	E	D	M	Q	Q	G	R	F	R	R	D	L	F	Y	R	L	S	I	L	R	L	Q	L	P	P	L	R	E	R	V	A	D	I	L	P	L	A	E	S	F	L	K	V	S	L	A	A	L	S	A	P	F	S
Query Conservation																										.	.	.
Alig confidence		.	.	.	.	.	.	.	.																	.	.	.											.	.	.	.	.	.	.															.	.	.	.	.	.	.	.											.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.															.	.	.	.	.	.	.	.											.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	Q	R	A	H	V	I	V	M	A	A	T	N	R	P	N	S	I	D	P	A	L	R	R	F	G	R	F	D	R	.	.	.	.	.	.	.	E	V	D	I	G	I	P	D	A	T	G	R	L	E	.	.	.	.	.	.	.	.	I	L	Q	I	H	T	K	N	M	K	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	G	G	G									S		G	G	G	S		G	G	G	T	S	T	T	S	S			.	.	.	.	.	.	.															.	.	.	.	.	.	.	.					T	T	T	T	S		.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.															.	.	.	.	.	.	.	.											.	.	.	.
Template SS confidence
										337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.								.	.	.	.	370	.	.	.	.	.	.	.	.	.									380	.	.	.	.	.	.	.	.	.
		426	.	.	.	430	.	.	.	.	.		.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		A	A	L	R	Q	G	L	Q	A	S	.	E	T	V	L	L	H	Y	D	W	P	G	N	I	R	E	L	R	N	M	M	E	R	L	A	L	F	L	S	V	E	P	T	P	D	L	T	P	Q	F	M	Q	L	L	L	P	E	L	A	R	E	S	A	K	T	P	A	P	R	L	L	T
Query Conservation												.
Alig confidence		.	.	.	.	.						.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	L	A	D	D	V	D	L	E	Q	V	A	N	E	T	H	G	H	V	G	A	D	L	A	A	L	C	S	E	A	A	L	Q	A	I	R	K	K	M	D	L	I	D	L	E	D	E	T	I	D	A	E	V	M	N	S	L	A	V	T	M	D	D	F	R	W	A	L
Template Known Secondary structure		.	.	.	.	.			T	T								T	T			S																						T	T	T	T	T		S	S				B
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions