Job Description P77743 Confidence 99.69% Date Thu Jan 5 12:32:24 GMT 2012 Rank 23 Aligned Residues 193 % Identity 19% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.									.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.
Query Sequence		G	D	M	L	G	Q	S	P	Q	M	E	Q	V	R	Q	T	I	L	L	Y	A	.	.	.	.	.	.	.	.	R	S	S	A	A	V	L	I	E	G	E	T	G	T	G	K	E	L	A	A	Q	A	I	H	R	E	Y	F	A	R	H	D	A	R	Q	G	K	K	S	H	P	F	V	A	V	N	C	G	A	I	A
Query Conservation																							.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	G	I	I	K	W	G	D	P	V	T	R	V	L	D	D	G	E	L	L	V	Q	Q	T	K	N	S	D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	.	.	.	.	.	.	.	.	.	.	.	N	F	P	F	I	K	I	C	S	P	D	K	M
Template Known Secondary structure		T						S																					S	S		S									S	T	T	S	S													.	.	.	.	.	.	.	.	.	.	.			S							G	G	G	S
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560												.	.	.	.	.	.	.	.	.	570	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.											.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	L	L	E	A	E	L	F	G	Y	E	E	G	A	F	T	G	S	R	R	G	G	R	A	G	L	F	E	I	A	H	G	G	T	L	F	L	D	E	I	G	E	M	P	.	.	.	.	.	.	.	.	.	.	L	P	L	Q	T	R	L	L	R	V	L	E	E	K	E	V	T	R	V	G	G	H	Q	P	V
Query Conservation																																															.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Template Sequence		I	G	F	S	E	T	A	K	C	Q	A	M	K	K	I	F	D	D	A	Y	K	S	.	.	.	.	.	.	.	.	.	Q	L	S	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	K	A	P	.	.	.	.	.	.	.	.	P	Q
Template Known Secondary structure		T	T																			T	S	.	.	.	.	.	.	.	.	.	S													T	T		B	T	T	T	T	B													T	T				.	.	.	.	.	.	.	.	S	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Template SS confidence
		574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.										.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.									.	.
		358	.	360	.	.	.	.	.	.	.	.	.			370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		P	V	D	V	R	V	I	S	A	T	H	C	.	.	N	L	E	E	D	M	Q	Q	G	R	F	R	R	D	L	F	Y	R	L	S	I	L	R	L	Q	L	P	P	L	R	E	R	V	A	D	I	L	P	L	A	E	S	F	L	K	V	S	L	A	A	L	S	A	P	F	S	A	A	L	R	Q	G	L	Q	A	S
Query Conservation														.	.
Alig confidence														.	.												.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.												.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.												.	.	.	.
Template Sequence		G	R	K	L	L	I	I	G	T	T	S	R	K	D	V	L	Q	E	M	E	M	L	N	A	F	.	.	.	.	.	.	.	.	.	S	T	T	I	H	V	P	N	I	A	T	G	E	Q	.	.	.	.	.	.	.	.	.	L	L	E	A	L	E	L	L	G	N	F	.	.	.	.	K	D	K	E	R	T	T	I
Template Known Secondary structure		T										S								T	T	G	G	G	T	S	.	.	.	.	.	.	.	.	.	S														.	.	.	.	.	.	.	.	.									T		S	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.												.	.	.	.
Template SS confidence
		637	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.										.	.	.	.	.	.	.	.	670	.	.	.	.	.										.	.	.	.	680	.	.	.	.	.	.					.	.	.	690	.	.	.	.
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	V	L	L	H	Y	D	W	P	G	N	I	R	E	L	R	N	M	M	E	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	Q	V	K	G	K	K	V	W	I	G	I	K	K	L	L	M	L	I	E	M	S
Template Known Secondary structure						T	T	S
Template Predicted Secondary structure
Template SS confidence
		695	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions