Job Description P77743 Confidence 98.28% Date Thu Jan 5 12:32:24 GMT 2012 Rank 97 Aligned Residues 181 % Identity 20% Template c1jr3E_ PDB info PDB header:transferase Chain: E: PDB Molecule:dna polymerase iii, delta' subunit; PDBTitle: crystal structure of the processivity clamp loader gamma2 complex of e. coli dna polymerase iii Resolution 2.70 Å

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		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.														.	.	.	280	.	.	.	.					.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Query Sequence		P	Q	M	E	Q	V	R	Q	T	I	L	L	Y	A	R	S	S	A	A	V	L	I	E	G	E	T	G	T	G	K	E	L	A	A	Q	A	I	H	R	E	Y	F	A	R	H	D	A	R	Q	G	K	K	S	H	.	.	.	.	.	.	.	.	.	.	.	.	.	P	F	V	A	V	N	C	G	.	.	.	.	A
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Alig confidence														.																																										.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template Conservation														.
Template Sequence		P	D	F	E	K	L	V	A	S	Y	Q	A	.	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	E	K	G	K	N	T
Template Known Secondary structure									T	T	T	T	T	.	S				S								T	T	S	S													T		S	S			S	S	S			S		S								T	S			S	S								T	T	S	S	S
Template Predicted Secondary structure														.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	E	S	L	L	E	A	E	L	F	G	Y	E	E	G	A	F	T	G	S	R	R	G	G	R	A	G	L	F	E	I	A	H	G	G	T	L	F	L	D	E	I	G	E	M	P	L	P	L	Q	T	R	L	L	R	V	L	E	E	K	E	V	T	R	V	G	G	H	Q	P	V	P	V	D	V	R	V	I	S
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	W	V	T	D	A	A	L	L	T	D	A	A	A	N	A	L	L	K	T	L	E	E	.	.	.	.	.	.	.	.	.	.	.	P	P	A	E	T	W	F	F	L
Template Known Secondary structure		B													S	S			T	T	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.					S		G	G	G	B														S	.	.	.	.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110														.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.												.	.	.	.	.	140	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	H	C	N	L	E	E	D	M	Q	Q	G	R	F	R	R	D	L	F	Y	R	L	S	I	L	R	L	Q	L	P	P	L	R	E	R	V	A	D	I	L	P	L	A	E	S	F	L	K	V	S	L	A	A	L	S	A	P	F	S	A	A	L	R	Q	G	L	Q	A	S	E	T	V	L	L	H	Y	D	W	P
Query Conservation
Alig confidence							.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation							.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		A	T	R	E	P	.	.	.	.	.	.	.	E	R	L	L	A	T	L	R	S	R	C	R	L	H	Y	L	A	P	P	P	E	Q	Y	A	V	T	.	.	.	.	.	.	.	.	W	L	S	R	E	.	.	.	.	.	.	.	.	.	.	.	.	V	T	M	S	Q	D	A	L	L	A	A	L	R	L	S	.	A
Template Known Secondary structure				S		S	.	.	.	.	.	.	.	T	T	S		T	T	T	T	T	T	S																.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	S													T	T	.	T
Template Predicted Secondary structure							.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		144	.	.	.	.								.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.									.	.	.	.	.													180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.
		446	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	I	R	E	L	R	N	M	M	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	S	P	G	A	A	L	A	L	F	Q
Template Known Secondary structure		T										S
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions