Job Description P77743 Confidence 99.83% Date Thu Jan 5 12:32:24 GMT 2012 Rank 15 Aligned Residues 255 % Identity 17% Template c1in8A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction dna helicase ruvb; PDBTitle: thermotoga maritima ruvb t158v Resolution 1.90 Å

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		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																								.	.	.
Query SS confidence																								.	.	.
Query Sequence		V	L	G	D	M	L	G	Q	S	P	Q	M	E	Q	V	R	Q	T	I	L	L	Y	.	.	.	A	R	S	S	A	A	V	L	I	E	G	E	T	G	T	G	K	E	L	A	A	Q	A	I	H	R	E	Y	F	A	R	H	D	A	R	Q	G	K	K	S	H	P	F	V	A	V	N	C	G	A	I	A	E	S	L
Query Conservation																								.	.	.
Alig confidence																								.	.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	D	E	F	I	G	Q	E	N	V	K	K	K	L	S	L	A	L	E	A	A	K	M	R	G	E	V	L	D	H	V	L	L	A	G	P	P	G	L	G	K	T	T	L	A	H	I	I	A	S	E	L	.	.	.	.	.	.	.	.	.	.	.	Q	T	N	I	H	V	T	S	G	P	V	L	V	K	Q	G
Template Known Secondary structure		S	G	G	G			S																			T										S	S	T	T	S	S													.	.	.	.	.	.	.	.	.	.	.	T								T	T	T			S
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.												.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	A	E	L	F	G	Y	E	E	G	A	F	T	G	S	R	R	G	G	R	A	G	L	F	E	I	A	H	G	G	T	L	F	L	D	E	I	G	E	M	P	L	P	L	Q	T	R	L	L	R	V	L	E	E	K	E	V	T	R	V	G	G	H	Q	P	V	P	V	D	V	R	V	I	S	A	T	H	C	N
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Template Sequence		D	M	A	A	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	L	E	R	G	D	V	L	F	I	D	E	I	H	R	L	N	K	A	V	E	E	L	L	Y	S	A	I	E	D	F	Q	.	.	.	.	.	.	.	I	D	I	Q	P	F	T	L	V	G	A	T	V	R	S	G
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T			T	T							T	G	G	G																S		.	.	.	.	.	.	.													S		G	G
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.																			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130								.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	E	D	M	Q	Q	G	R	F	R	R	D	L	F	Y	R	L	S	I	L	R	L	Q	L	P	P	L	R	E	R	V	A	D	I	L	P	L	A	E	S	F	L	K	V	S	L	A	A	L	S	A	P	F	S	A	A	L	R	Q	G	L	Q	A	S	E	T	V	L	L	H	Y	D	W	P	G	N	I	R	E
Query Conservation
Alig confidence			.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.													.	.	.	.	.	.	.													.
Template Conservation			.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.													.	.	.	.	.	.	.													.
Template Sequence		L	.	.	.	.	.	.	.	L	S	S	P	L	R	S	R	F	G	I	I	L	E	L	D	F	Y	T	V	K	E	L	K	E	.	.	.	.	.	.	.	.	I	I	K	R	A	A	S	L	M	D	V	E	.	.	.	.	.	.	.	I	E	D	A	A	A	E	M	I	A	K	R	.	S	R	G	T	P	R	I
Template Known Secondary structure		G	.	.	.	.	.	.	.	S						T	T		S																.	.	.	.	.	.	.	.									T	T			.	.	.	.	.	.	.	B											T	.	S	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.													.	.	.	.	.	.	.													.
Template SS confidence
		162								.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.									.	.	190	.	.	.	.	.	.	.	.	.								200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.				.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		L	R	N	M	M	E	R	L	A	L	F	L	S	V	E	P	T	P	D	L	T	P	Q	F	M	Q	L	L	L	P	E	L	A	R	E	S	A	K	T	P	A	P	R	L	L	T	P	Q	Q	A	L	E	K	F	N	G	D	.	.	.	K	T	A	A	A	N	Y	L	G	I	S	R	T	T	F	W	R	R	L	K
Query Conservation																																																											.	.	.
Alig confidence																																																											.	.	.
Template Conservation
Template Sequence		A	I	R	L	T	K	R	V	R	D	M	L	T	V	V	K	A	D	R	I	N	T	D	I	V	L	K	T	M	E	V	L	N	I	D	D	E	G	L	D	E	F	D	R	K	I	L	K	T	I	I	E	I	Y	R	G	G	P	V	G	L	N	A	L	A	A	S	L	G	V	E	A	D	T	L	S	E	V	Y	E
Template Known Secondary structure																	T		S	S	B													T			T	T																	S	T	T			B										T	S								T	T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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