Return to main results Retrieve Phyre Job Id

Job DescriptionQ46812
Confidence31.89%DateThu Jan 5 12:34:40 GMT 2012
Rank169Aligned Residues34
% Identity15%Templatec3swnC_
PDB info PDB header:rna binding proteinChain: C: PDB Molecule:u6 snrna-associated sm-like protein lsm7; PDBTitle: structure of the lsm657 complex: an assembly intermediate of the lsm12 7 and lsm2 8 rings
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.....
Predicted Secondary structure 













Query SS confidence 

































Query Sequence  LILKNVTAVQLHPAKVQEGVDIAIENDVIVAIGD
Query Conservation 





 

      
     
 
  
 
  

 
Alig confidence 

































Template Conservation 


    
          

 
 


  
  
  
Template Sequence  LVLDDVEEQLRLTGAIRKLGLVVVRGTTLVLIAP
Template Known Secondary structure 



S

TTT
Template Predicted Secondary structure 







Template SS confidence 

































   5960.........70.........80.........90..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions