Return to main results Retrieve Phyre Job Id

Job DescriptionQ46812
Confidence100.00%DateThu Jan 5 12:34:40 GMT 2012
Rank42Aligned Residues386
% Identity18%Templatec3gipB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:n-acyl-d-glutamate deacylase; PDBTitle: crystal structure of n-acyl-d-glutamate deacylase from2 bordetella bronchiseptica complexed with zinc, acetate and3 formate ions.
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70........
Predicted Secondary structure 

















































...
Query SS confidence 












































































. . .
Query Sequence  LILKNVTAVQLHPAKVQEGVDIAIENDVIVAIGDALTQRYPDASFKEMHGRIVMPGIVCSHNHFYSGLSRGIMANIA. . .
Query Conservation 





 

      
     
 
  
 
  

           


  
  
 




 
 
              ...
Alig confidence 












.























..




































...
Template Conservation 


 

 
     .       
 
 

 
  

     ..    


  
  
 




 
 
                 
Template Sequence  FKITGGWIIDGTG. APRRRADLGVRDGRIAAIGELGAH. . PARHAWDASGKIVAPGFIDVHGHDDLMFVEKPDLRWKTSQ
Template Known Secondary structure  SS

SSS.



TT

SSS..
BSS
TTS
SS


TT
TT
TT
Template Predicted Secondary structure 





.











..
























Template SS confidence 















































































   910.........20. ........30.........40..... ....50.........60.........70.........80.....
 
   7980.........90.........100
Predicted Secondary structure  ..........................................................








Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .





















Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PCPDFISTLKNLWWRLDRALDE
Query Conservation  ..........................................................                      
Alig confidence  ..........................................................





















Template Conservation 
 

                                                                            
Template Sequence  GITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLFADVPAYFAALDAQRPMINVAALVGHANLRLAAMRDPQAAPTAAE
Template Known Secondary structure  T

TT

S
S


TT


GGGGGT
SS


SSS

SS
SSTTS


Template Predicted Secondary structure 
















































Template SS confidence 















































































   86...90.........100.........110.........120.........130.........140.........150.........160.....
 
   101........110.........120.........130.........140.........150.........160.........170.........180
Predicted Secondary structure 


























Query SS confidence 















































































Query Sequence  ESLYYSGLICSLEAIKSGCTSVIDHHASPAYIGGSLSTLRDAFLKVGLRAMTCFETTDRNNGIKELQEGVEENIRFARLI
Query Conservation                   
 
                                                            
Alig confidence 
























































............










Template Conservation                                     
                     ............           
Template Sequence  QQAMQDMLQAALEAGAVGFSTGLAYQPGAVAQAAELEGLARVAAERRRLHTSHIRNE. . . . . . . . . . . . ADGVEAAVEEV
Template Known Secondary structure  T

TTSTTGGG

TT

S
S............STT
Template Predicted Secondary structure 





















............


Template SS confidence 















































































   166...170.........180.........190.........200.........210.........220.. .......230...
 
   181........190.........200.........210.........220.........230.........240.........250.........260
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  DEAKKATSEPYLVEAHIGAHAPFTVPDAGLEMLREAVKATGRGLHIHAAEDLYDVSYSHHWYGKDLLARLAQFDLIDSKT
Query Conservation                                      
         
                                 
Alig confidence 



























































.......












Template Conservation                                   
      
  
                .......             
Template Sequence  LAIGRGTGCATVVSHHKCMMPQNWGRSRATLANIDRAREQGVEVALDIYPYPGSSTILIP. . . . . . . ERAETIDDIRITW
Template Known Secondary structure 

TT



SGGGTTTT


S
S


G.......GGTTTSS

Template Predicted Secondary structure 



















.......




Template SS confidence 















































































   234.....240.........250.........260.........270.........280.........290... ......300......
 
   261........270.........280.........290.... .....300.........310.........320.........330.
Predicted Secondary structure 











.......











..
Query SS confidence 

































. . . . . . .




































. .
Query Sequence  LVAHGLYLSKDDITLLNQRDAFLVHNARSNMNNH. . . . . . . VGYNHHLSDIRNLALGTDGIGSDMFEEMKFAFFKHRD. .
Query Conservation                            
       .......         
     


                   ..
Alig confidence 

































.......




































..
Template Conservation                                                          


                     
Template Sequence  STPHPECSGEYLADIAARWGCDKTTAARRLAPAGAIYFAMDEDEVKRIFQHPCCMVGSDGLPNDARPHPRLWGSFTRVLG
Template Known Secondary structure  SS
GGGTT
BTS

S



STT




TT
SS

T
Template Predicted Secondary structure 




































Template SS confidence 















































































   307..310.........320.........330.........340.........350.........360.........370.........380......
 
   332.......340.........350.........360.........370.........380.........390.........400......
Predicted Secondary structure  .....






































Query SS confidence  . . . . .










































































Query Sequence  . . . . . AGGPLWPDSFAKALTNGNELMSRNFGAKFGLLEAGYKADLTICDYNSPTPLLADNIAGHIAFGMGSGSVHSVMVN
Query Conservation  .....  
     

   
   
           
 
  
  




 
 
                      
  


 
Alig confidence  .....






















...































.....











Template Conservation          

  


   
   
  

 ...   


  

 






              .....     
  
 
 
Template Sequence  RYVREARLMTLEQAVARMTALPARVFGF. . . AERGVLQPGAWADVVVFDPDTVADRATWDEPT. . . . . LASVGIAGVLVN
Template Known Secondary structure 




T
SS
TT
...TT
SS

TTSB


TTT
B



SSSTT.....


BST
Template Predicted Secondary structure 







...
























.....






Template SS confidence 















































































   387..390.........400.........410.... .....420.........430.........440...... ...450........
 
   407..410.......
Predicted Secondary structure 



Query SS confidence 










Query Sequence  GVMVYEDRQFN
Query Conservation 
  
  

   
Alig confidence 










Template Conservation 
  
   
   
Template Sequence  GAEVFPQPPAD
Template Known Secondary structure  TSS

SS
Template Predicted Secondary structure 


Template SS confidence 










   459460.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions