Job Description Q46812 Confidence 100.00% Date Thu Jan 5 12:34:40 GMT 2012 Rank 27 Aligned Residues 388 % Identity 15% Template c3d6nA_ PDB info PDB header:hydrolase/transferase Chain: A: PDB Molecule:dihydroorotase; PDBTitle: crystal structure of aquifex dihydroorotase activated by aspartate2 transcarbamoylase Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	L	K	N	V	T	A	V	Q	L	H	P	A	K	V	Q	E	G	V	D	I	A	I	E	N	D	V	I	V	A	I	G	D	A	L	T	Q	R	Y	P	D	A	S	F	K	E	M	H	G	R	I	V	M	P	G	I	V	C	S	H	N	H	F	Y	S	G	L	S	R	G	I	M	A	N	I	A	P	C	P
Query Conservation
Alig confidence																.																								.	.
Template Conservation																.																								.	.
Template Sequence		L	I	V	K	N	G	Y	V	I	D	P	S	Q	N	.	L	E	G	E	F	D	I	L	V	E	N	G	K	I	K	K	I	D	K	N	I	L	V	.	.	P	E	A	E	I	I	D	A	K	G	L	I	V	C	P	G	F	I	D	I	H	V	H	L	R	D	P	G	Q	T	Y	K	E	D	I	E	S	G	S	R
Template Known Secondary structure						S						G	G	G	T	.				S							T	T							S	S				.	.	T	T							T	T	S															T	T	T		T	T	T
Template Predicted Secondary structure																.																								.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	I	S	T	L	K	N	L	W	W	R	L	D	R	A	L	D	E	E	S	L	Y	Y	S	G	L	I	C	S	L	E	A	I	K	S	G	C	T	S	V	I	D	H	H	A	S	P	A	Y	I	G	G	S	L	S	T	L	R	D	A	F	L	K	V	G	L	R	A	M	T	C	F	E	T	T	D	R	N	N
Query Conservation
Alig confidence																																																																																.	.
Template Conservation																																																																																.	.
Template Sequence		C	A	V	A	G	G	F	T	T	I	V	C	M	P	N	T	N	P	P	I	D	N	T	T	V	V	N	Y	I	L	Q	K	S	K	S	V	G	L	C	R	V	L	P	T	G	T	I	T	K	G	R	K	G	K	E	I	A	D	F	Y	S	L	K	E	A	G	C	V	A	F	T	D	D	G	S	P	V	M	.	.
Template Known Secondary structure						T	T								S		S	S	S		S		S																S	S						B		S	B	G	G	G		S	S	S	B										T				B			T	T	S				.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.												.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	I	K	E	L	Q	E	G	V	E	E	N	I	R	F	A	R	L	I	D	E	A	K	K	A	T	S	E	P	Y	L	V	E	A	H	I	.	.	.	.	.	.	.	.	.	.	.	G	A	H	A	P	F	T	V	P	D	A	G	L	E	M	L	R	E	A	V	K	A	T	G	R	G	L	H	I	H	A	A	E
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	D	S	S	V	M	R	K	A	L	E	L	A	S	Q	L	G	V	P	I	M	D	H	C	E	D	D	K	L	A	Y	G	V	I	N	E	G	E	V	S	A	L	L	G	L	S	S	R	A	P	E	A	E	E	I	Q	I	A	R	D	G	I	L	A	Q	R	T	G	G	H	V	H	I	Q	H	V	S
Template Known Secondary structure		.	.	.	.															T	T										T	T	T	B		S	S			T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	Y	D	V	S	Y	S	H	H	W	Y	G	K	D	L	L	A	R	L	A	Q	F	D	L	I	D	S	K	T	L	V	A	H	G	L	Y	L	S	K	D	D	I	T	L	L	N	Q	R	D	A	F	L	V	H	N	A	R	S	N	M	N	N	H	V	G	Y	N	H	H	L	S	D	I	R	N	L	A	L	G
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.																																		.	.
Template Conservation									.	.	.	.	.	.	.	.	.																																		.	.
Template Sequence		T	K	L	S	L	E	I	.	.	.	.	.	.	.	.	.	I	E	F	F	K	E	K	G	V	K	I	T	C	E	V	N	P	N	H	L	L	F	T	E	R	E	V	L	N	S	G	A	N	.	.	A	R	V	N	P	P	L	R	K	K	E	D	R	L	A	L	I	E	G	V	K	R	G	I	I	D	C	F	A
Template Known Secondary structure									.	.	.	.	.	.	.	.	.						T	T	T																T	T						G	G	G	.	.	G			S	S																	T	T		S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.																																		.	.
Template SS confidence
		235	.	.	.	.	240	.										.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		311	.	.	.	.	.	.	.	.	320																.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	D	G	I	G	S	D	M	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	M	K	F	A	F	F	K	H	R	D	A	G	G	P	L	W	P	D	S	F	A	K	A	L	T	N	G	N	E	L	M	S	R	N	F	G	A	K	F	G	L	L	E	A	G	Y	K	A	D	L	T	I	C	D
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.
Template Conservation																																																													.	.	.	.
Template Sequence		T	D	H	A	P	H	Q	T	F	E	K	E	L	V	E	F	A	M	P	G	I	I	G	L	Q	T	A	L	P	S	A	L	E	L	Y	R	K	G	I	I	S	L	K	K	L	I	E	M	F	T	I	N	P	A	R	I	I	G	V	.	.	.	.	D	L	G	T	L	K	L	G	S	P	A	D	I	T	I	F	D
Template Known Secondary structure				B					G	G	G	S	S	S	G	G	G					B			T	T	T											T	T	S	S								T	T	T								T		.	.	.	.	S		S				T	T	S	B
Template Predicted Secondary structure																																																													.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.					.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.						400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																										.	.	.	.	.
Query SS confidence																										.	.	.	.	.
Query Sequence		Y	N	S	P	T	P	L	L	A	D	N	I	A	G	H	I	A	F	G	M	G	S	G	S	.	.	.	.	.	V	H	S	V	M	V	N	G	V	M	V	Y	E	D
Query Conservation																										.	.	.	.	.
Alig confidence																										.	.	.	.	.
Template Conservation
Template Sequence		P	N	K	E	W	I	L	N	E	E	T	N	L	S	K	S	R	N	T	P	L	W	G	K	V	L	K	G	K	V	I	Y	T	I	K	D	G	K	M	V	Y	K	D
Template Known Secondary structure									S	T	T	T			S	S					T	T	T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.