Job Description Q46812 Confidence 100.00% Date Thu Jan 5 12:34:40 GMT 2012 Rank 5 Aligned Residues 394 % Identity 22% Template c1p1mA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein tm0936; PDBTitle: structure of thermotoga maritima amidohydrolase tm09362 bound to ni and methionine Resolution 1.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	L	K	N	V	T	A	V	Q	L	H	P	A	K	V	Q	E	G	V	D	I	A	I	E	N	D	V	I	V	A	I	G	D	A	L	T	Q	R	Y	P	D	A	S	F	K	E	M	H	G	R	I	V	M	P	G	I	V	C	S	H	N	H	F	Y	S	G	L	S	R	G	I	M	A	N	I	A	P	C	P
Query Conservation
Alig confidence																				.																.	.	.	.	.																																							.	.	.
Template Conservation																				.																.	.	.	.	.																																							.	.	.
Template Sequence		M	I	I	G	N	C	L	I	L	K	D	F	S	S	E	P	F	W	.	G	A	V	E	I	E	N	G	T	I	K	R	V	L	Q	.	.	.	.	.	G	E	V	K	V	D	L	D	L	S	G	K	L	V	M	P	A	L	F	N	T	H	T	H	A	P	M	T	L	L	R	G	V	A	E	D	L	S	.	.	.
Template Known Secondary structure												S	T	T	S					.							T	T								.	.	.	.	.	S	S				S				T	T														G	G	G	G	G	G	T	T	S	S		S			.	.	.
Template Predicted Secondary structure																				.																.	.	.	.	.																																							.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	I	S	T	L	K	N	L	W	W	R	L	D	R	A	L	D	E	E	S	L	Y	Y	S	G	L	I	C	S	L	E	A	I	K	S	G	C	T	S	V	I	D	H	H	A	S	P	A	Y	I	G	G	S	L	S	T	L	R	D	A	F	L	K	V	G	L	R	A	M	T	C	F	E	T	T	D	R	N	N
Query Conservation
Alig confidence		.																																																									.	.	.	.	.	.	.
Template Conservation		.																																																									.	.	.	.	.	.	.
Template Sequence		.	F	E	E	W	L	F	S	K	V	L	P	I	E	D	R	L	T	E	K	M	A	Y	Y	G	T	I	L	A	Q	M	E	M	A	R	H	G	I	A	G	F	V	D	M	Y	F	H	E	E	W	I	A	K	A	V	R	D	.	.	.	.	.	.	.	F	G	M	R	A	L	L	T	R	G	L	V	D	S	N	G
Template Known Secondary structure		.							T	T						T	T																			T	T	T									S	S											.	.	.	.	.	.	.														B	T	T
Template Predicted Secondary structure		.																																																									.	.	.	.	.	.	.
Template SS confidence
			72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.								.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	K	E	L	Q	E	G	V	E	E	N	I	R	F	A	R	L	I	D	E	A	K	K	A	T	S	E	P	Y	L	V	E	A	H	I	G	A	H	A	P	F	T	V	P	D	A	G	L	E	M	L	R	E	A	V	K	A	T	G	R	G	L	H	I	H	A	A	E	D	L	Y	D	V	S	Y	S	H	H	W
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.																																																												.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.																																																												.	.	.	.	.	.	.	.
Template Sequence		D	D	G	G	.	.	.	.	.	.	.	.	.	R	L	E	E	N	L	K	L	Y	N	E	W	N	G	F	E	G	R	I	F	V	G	F	G	P	H	S	P	Y	L	C	S	E	E	Y	L	K	R	V	F	D	T	A	K	S	L	N	A	P	V	T	I	H	L	Y	E	T	S	K	.	.	.	.	.	.	.	.
Template Known Secondary structure		B		T	T	.	.	.	.	.	.	.	.	.													T	T	G	G	G	T										T	T	T	S															T	T								S		S	T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.																																																												.	.	.	.	.	.	.	.
Template SS confidence
		144	.	.	.										.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.				.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.																								.
Query SS confidence																																																							.	.	.																								.
Query Sequence		Y	G	K	D	L	L	A	R	L	A	Q	F	D	L	I	D	S	K	T	L	V	A	H	G	L	Y	L	S	K	D	D	I	T	L	L	N	Q	R	D	A	F	L	V	H	N	A	R	S	N	M	N	N	H	.	.	.	V	G	Y	N	H	H	L	S	D	I	R	N	L	A	L	G	T	D	G	I	G	S	D	.
Query Conservation																																																							.	.	.																								.
Alig confidence		.																																																					.	.	.																								.
Template Conservation		.
Template Sequence		.	E	E	Y	D	L	E	D	I	L	N	I	G	L	K	E	V	K	T	I	A	A	H	C	V	H	L	P	E	R	Y	F	G	V	L	K	D	I	P	F	F	V	S	H	N	P	A	S	N	L	K	L	G	N	G	I	A	P	V	Q	R	M	I	E	H	G	M	K	V	T	L	G	T	D	G	A	A	S	N	N
Template Known Secondary structure		.					T					T	T	T	T	T	T	S								T	T			G	G	G	T	T	T	T	T	T	S	S													T	T												T	T										T	T	T	T	S
Template Predicted Secondary structure		.
Template SS confidence
			207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
							318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	M	F	E	E	M	K	F	A	F	F	K	H	R	D	A	G	G	P	L	W	P	D	S	F	A	K	A	L	T	N	G	N	E	L	M	S	R	N	F	G	A	K	F	G	L	L	E	A	G	Y	K	A	D	L	T	I	C	D	Y	N	S	P	T	P	L	L	A	D	N	I	A	G	H	I	A
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																						.	.	.	.
Template Conservation																																												.	.	.	.
Template Sequence		S	L	N	L	F	F	E	M	R	L	A	S	L	L	Q	K	A	Q	N	P	R	N	L	D	V	N	T	C	L	K	M	V	T	Y	D	G	A	Q	A	M	G	F	.	.	.	.	K	S	G	K	I	E	E	G	W	N	A	D	L	V	V	I	D	L	D	L	P	E	M	F	P	V	Q	N	I	K	N	H	L	V
Template Known Secondary structure																		T	T		T	T	S	S										T								T		.	.	.	.	S		S	S			T	T	S	B										S	G	G	G		S	G	G	G
Template Predicted Secondary structure																																												.	.	.	.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.					.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.		.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		F	G	M	G	S	G	S	V	H	S	V	M	V	N	G	V	M	V	Y	E	D	R	Q	.	F	N	F	D	C	D	S	I	Y	A	Q	A	R	K	A	A	A	S	M	W
Query Conservation																									.
Alig confidence				.																					.
Template Conservation				.
Template Sequence		H	A	.	F	S	G	E	V	F	A	T	M	V	A	G	K	W	I	Y	F	D	G	E	Y	P	T	I	D	S	E	E	V	K	R	E	L	A	R	I	E	K	E	L	Y
Template Known Secondary structure			T	.			S			S					T	T						T	T	B		T	T	S
Template Predicted Secondary structure				.
Template SS confidence
		362	.		.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.