Phyre 2 alignment of Q46812 with c1o12B

Job Description Q46812
Confidence 100.00% Date Thu Jan 5 12:34:40 GMT 2012

Rank 57 Aligned Residues 354

% Identity 15% Template c1o12B_

PDB info PDB header:hydrolase Chain: B: PDB Molecule:n-acetylglucosamine-6-phosphate deacetylase; PDBTitle: crystal structure of n-acetylglucosamine-6-phosphate2 deacetylase (tm0814) from thermotoga maritima at 2.5 a3 resolution

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	L	K	N	V	T	A	V	Q	L	H	P	A	K	V	Q	E	G	V	D	I	A	I	E	N	D	V	I	V	A	I	G	D	A	L	T	Q	R	Y	P	D	A	S	F	K	E	M	H	G	R	I	V	M	P	G	I	V	C	S	H	N	H	F	Y	S	G	L	S	R	G	I	M	A	N	I	A	P	C	P	D
Query Conservation
Alig confidence																.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.																		.	.	.	.	.	.	.	.	.	.
Template Sequence	I	V	E	K	V	L	I	V	D	P	I	D	G	E	F	.	.	T	G	D	V	E	I	E	E	G	K	I	V	K	V	E	K	R	.	.	.	.	.	.	.	.	.	.	E	C	I	P	R	G	V	L	X	P	G	F	V	D	P	H	I	H	G	V	V	G	A	D	T	X	N	C	D	F	S	E	X	E	E	F
Template Known Secondary structure										T	T	T				.	.								T	T									.	.	.	.	.	.	.	.	.	.		S			S	S															T	T			T	T	T	T
Template Predicted Secondary structure																.	.																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.			.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.											.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.

	83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	I	S	T	L	K	N	L	W	W	R	L	D	R	A	L	D	E	E	S	L	Y	Y	S	G	L	I	C	S	L	E	A	I	K	S	G	C	T	S	V	I	D	H	H	A	S	P	A	Y	I	G	G	S	L	S	T	L	R	D	A	F	L	K	V	G	L	R	A	M	T	C	F	E	T	T	D	R	N	N	G
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	Y	S	Q	G	V	T	T	F	L	A	T	T	V	S	T	S	L	E	K	X	K	E	I	L	R	K	A	R	D	Y	I	L	E	N	P	S	T	S	L	L	G	V	H	L	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	I	S	K	E	K	K	G	A	H	S	E	K	H	I
Template Known Secondary structure			T	T	T										S																				S	T	T		S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S		S	T	T		T	T	S		T	T	T
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.																		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.

	163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	K	E	L	Q	E	G	V	E	E	N	I	R	F	A	R	L	I	D	E	A	K	K	A	T	S	E	P	Y	L	V	E	A	H	I	G	A	H	A	P	F	T	V	P	D	A	G	L	E	M	L	R	E	A	V	K	A	T	G	R	G	L	H	I	H	A	A	E	D	L	Y	D	V	S	Y	S	H	H	W	Y
Query Conservation
Alig confidence																																																																								.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.
Template Sequence	R	P	P	S	E	R	E	L	S	E	I	D	S	P	A	K	X	L	T	F	A	P	E	I	E	S	S	E	L	L	L	R	L	V	K	R	D	I	V	L	S	A	G	H	S	I	A	T	F	E	E	F	X	K	F	Y	K	E	G	V	K	R	I	T	H	F	P	N	G	L	K	.	.	.	.	.	P	L	H	H
Template Known Secondary structure										T			T	T								T	T	S	T	T	G	G	G	G	G	G	G	G	G	G	T							S	B													T	T					S	S	T	T	T	T	B		.	.	.	.	.				S
Template Predicted Secondary structure																																																																								.	.	.	.	.
Template SS confidence
	133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.						.	.	.	.

	243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.									300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.
Query Sequence	G	K	D	L	L	A	R	L	A	Q	F	D	L	I	D	S	K	T	L	V	A	H	G	L	Y	L	S	K	D	D	I	T	L	L	N	Q	R	D	A	F	L	V	H	N	A	R	S	N	M	N	N	H	V	G	Y	N	H	.	.	.	.	.	.	.	.	H	L	S	D	I	R	N	L	A	L	G	T	D	G	I
Query Conservation																																																										.	.	.	.	.	.	.	.
Alig confidence																																																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	R	E	I	G	I	T	G	A	G	L	L	L	D	D	V	K	L	E	L	I	C	D	G	V	H	L	S	R	E	X	V	K	L	V	Y	K	V	K	K	A	N	G	I	V	L	V	T	D	S	I	S	A	A	G	L	K	D	G	T	T	T	L	G	D	L	V	V	K	V	K	D	G	V	P	R	L	E	D	G	T
Template Known Secondary structure	S												T	T								S	S	S	S	S													T	G	G	G							B		T	T	T	T	S		S						T	T							T	T					T	T	S
Template Predicted Secondary structure
Template SS confidence
	208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.

	315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	S	D	M	F	E	E	M	K	F	A	F	F	K	H	R	D	A	G	G	P	L	W	P	D	S	F	A	K	A	L	T	N	G	N	E	L	M	S	R	N	F	G	A	K	F	G	L	L	E	A	G	Y	K	A	D	L	T	I	C	D	Y	N	S	P	T	P	L	L	A	D	N	I	A	G	H	I	A	F	G
Query Conservation
Alig confidence																																									.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	A	G	S	T	L	F	F	S	Q	A	V	K	N	F	R	K	F	T	G	C	S	I	T	E	L	A	K	V	S	S	Y	N	S	C	V	E	L	G	L	.	.	.	D	D	R	G	R	I	A	E	G	T	R	A	D	L	V	L	L	D	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure	B			B																											T								T		.	.	.	T	T	S	S			S	T	T	S	B								T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.				.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

	395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	M	G	S	G	S	V	H	S	V	M	V	N	G	V	M	V	Y	E	D
Query Conservation
Alig confidence	.	.	.
Template Conservation	.	.	.
Template Sequence	.	.	.	L	N	V	V	X	T	I	K	E	G	E	V	V	F	R	S
Template Known Secondary structure	.	.	.									T	T
Template Predicted Secondary structure	.	.	.
Template SS confidence
				348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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