Job Description P0A6I3 Confidence 98.50% Date Thu Jan 5 11:03:12 GMT 2012 Rank 55 Aligned Residues 161 % Identity 12% Template c2pbrB_ PDB info PDB header:transferase Chain: B: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of thymidylate kinase (aq_969) from aquifex aeolicus2 vf5 Resolution 1.96 Å

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		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	I	S	I	A	G	S	V	A	V	G	K	S	T	T	A	R	V	L	Q	A	L	L	S	R	W	P	E	H	R	R	V	E	L	I	T	T	D	G	F	L	H	P	N	Q	V	L	K	E	R	G	L	M	K	K	K	G	F	P	E	S	Y	D	M	H	R	L	V	K	F	V	S	D	L	K	S	G	V	P
Query Conservation
Alig confidence																																.	.	.
Template Conservation																																.	.	.
Template Sequence		M	L	I	A	F	E	G	I	D	G	S	G	K	T	T	Q	A	K	K	L	Y	E	Y	L	K	Q	K	G	Y	F	.	.	.	V	S	L	Y	R	E	P	G	G	T	K	V	G	E	V	L	R	E	I	L	L	T	E	E	L	D	E	R	T	E	L	L	L	F	E	A	S	R	S	K	L	I	E	E	K	I	I
Template Known Secondary structure										T	T	S																T	T			.	.	.						S	S		S	S													S																						T
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30				.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	T	A	P	V	Y	S	H	L	I	Y	D	V	I	P	D	G	D	K	T	V	V	Q	P	D	I	L	I	L	E	G	L	N	V	L	Q	S	G	M	D	Y	P	H	D	P	H	H	V	F	V	S	D	F	V	D	F	S	I	Y	V	D	A	P	E	D	L	L	Q	T	W	Y	I	N	R	F	L	K	F	R
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Sequence		P	D	L	K	R	D	K	V	V	I	L	D	R	F	V	L	S	T	I	A	Y	Q	G	Y	G	K	G	L	D	V	E	F	I	K	N	L	N	E	F	A	T	.	.	.	.	.	.	.	.	.	R	G	V	K	P	D	I	T	L	L	L	D	I	P	V	D	I	A	L	R	R	L	K	E	K	.	.	.	.	.
Template Known Secondary structure						T	T							S										T	T	T	T																.	.	.	.	.	.	.	.	.	T	T				S																		T	T	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.										.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	A	F	T	D	P	D	S	Y	F	H	N	Y	A	K	L	T	K	E	E	A	I	K	T	A	M	T	L	W	K	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	F	E	N	K	E	F	L	E	K	V	R	K	G	F	L	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions