Return to main results Retrieve Phyre Job Id

Job DescriptionP27111
Confidence100.00%DateThu Jan 5 11:43:09 GMT 2012
Rank4Aligned Residues285
% Identity21%Templatec3t1bB_
PDB info PDB header:transcriptionChain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: crystal structure of the full-length aphb n100e variant
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
Predicted Secondary structure 














Query SS confidence 















































































Query Sequence  MLSRHINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIRLTDAGEVWRQYASRALQELGAGKR
Query Conservation 
    
  
  
   

 
 

  
 


 


  
  

  

  

 
      

  
  
   
            
Alig confidence 















































































Template Conservation 
 
  
  
  
   

 
 

  
 


 


  
  

  

  

 
   
  

  
  
   
            
Template Sequence  MKLDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTE
Template Known Secondary structure 

SS


T




SSS

Template Predicted Secondary structure 














Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.........80
 
   81........90.........100.........110.........120.........130.........140.........150.........160
Predicted Secondary structure 








































Query SS confidence 















































































Query Sequence  AIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPSITLQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEAIPL
Query Conservation              
 
                                                                 
Alig confidence 
















































....


























Template Conservation                                                   ....                           
Template Sequence  EITDECRGASGRIRISAPSELTKRMMMPMFNAFMEKYPDIHIELMMSNQ. . . . ADLDPTEWDVIFRVGPQRDSSLIARKI
Template Known Secondary structure  S

S

TTTTTTT
TT
SS....



STT
SS





S
Template Predicted Secondary structure 
























....




















Template SS confidence 















































































   81........90.........100.........110.........120......... 130.........140.........150......
 
   161........170.........180.........190.........200.........210.........220.........230.........240
Predicted Secondary structure 

















































Query SS confidence 















































































Query Sequence  LTESLALVVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELIRRTSLSTLL
Query Conservation                                                                        
  
 

  
Alig confidence 









































.




































Template Conservation                           
     
          .                           
  
 

  
Template Sequence  GEVKDILVASPQYLSSHPQPTHAEELHQHQLLKGYPLLKWQL. TNSQGETVVNSDRGRFQASALNVVRSACSEGLGITLM
Template Known Secondary structure 

S


SSGGGGGGS
TT

S.
TTS




SSSTT

Template Predicted Secondary structure 




























.










Template SS confidence 















































































   158.160.........170.........180.........190......... 200.........210.........220.........230......
 
   241....... .250.........260.........270.........280.........290
Predicted Secondary structure 


...















Query SS confidence 







. . .









































Query Sequence  PAAIATQH. . . DGLKAISLAPPLLERTAVLLRRKNSWQTAAAKAFLHMALDKC
Query Conservation 
       ...  
  
            
              

  
    
Alig confidence 







...









































Template Conservation 
            
               
              
   
    
Template Sequence  PDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVIGYH
Template Known Secondary structure  GGGTTSS

TT
B





SS

S
Template Predicted Secondary structure 


















Template SS confidence 




















































   237..240.........250.........260.........270.........280.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions