Job Description P27111 Confidence 99.68% Date Thu Jan 5 11:43:09 GMT 2012 Rank 33 Aligned Residues 197 % Identity 16% Template c3kosA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator ampr; PDBTitle: structure of the ampr effector binding domain from citrobacter2 freundii Resolution 1.83 Å

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		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	S	L	R	I	A	V	T	P	T	F	T	S	Y	F	I	G	P	L	M	A	D	F	Y	A	R	Y	P	S	I	T	L	Q	L	Q	E	M	S	Q	E	K	I	E	D	M	L	C	R	D	E	L	D	V	G	I	A	F	A	P	V	H	S	P	E	L	E	A	I	P	L	L	T	E	S	L	A	L	V	V
Query Conservation
Alig confidence																																																.	.	.
Template Conservation																																																.	.	.
Template Sequence		Q	E	K	L	K	I	G	V	V	G	T	F	A	I	G	C	L	F	P	L	L	S	D	F	K	R	S	Y	P	H	I	D	L	H	I	S	T	H	N	N	R	V	D	P	A	A	.	.	.	E	G	L	D	Y	T	I	R	Y	G	G	G	A	W	H	D	T	D	A	Q	Y	L	C	S	A	L	X	S	P	L	C
Template Known Secondary structure																	T													T	T										S							.	.	.		T		S								S			T	T															B
Template Predicted Secondary structure																																																.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.				.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		A	Q	H	H	P	L	A	V	H	E	Q	V	A	L	S	R	L	H	D	E	K	L	V	L	L	S	A	E	F	A	T	R	E	Q	I	D	H	Y	C	E	K	A	G	L	H	P	Q	V	V	I	E	A	N	S	I	S	A	V	L	E	L	I	R	R	T	S	L	S	T	L	L	P	A	A	I	A	T	Q	H	.
Query Conservation																																																																																	.
Alig confidence							.	.	.																																																																								.
Template Conservation							.	.	.
Template Sequence		S	P	T	L	A	.	.	.	S	Q	I	Q	T	P	A	D	I	L	K	F	P	L	L	R	S	Y	R	R	D	E	W	A	L	W	X	Q	T	V	G	E	A	P	P	S	P	T	H	N	V	X	V	F	D	S	S	V	T	X	L	E	A	A	Q	A	G	X	G	V	A	I	A	P	V	R	X	F	T	H	L	L
Template Known Secondary structure							.	.	.	T	T		S	S	G	G	G	G	G	G	S						S		T	T									T	T						T	T	S						S											T	T	S		B					G	G	G
Template Predicted Secondary structure							.	.	.
Template SS confidence
		170	.	.	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
			249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	D	G	L	K	A	I	S	L	A	P	P	L	L	E	R	T	A	V	L	L	R	R	K	N	S	W	Q	T	A	A	A	K	A	F	L	H	M	A	L	D	K	C	A	V
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		S	S	E	R	I	V	Q	P	F	L	T	Q	I	D	L	G	S	Y	W	I	T	R	L	Q	S	R	P	E	T	P	A	X	R	E	F	S	R	W	L	T	G	V	L	H	K
Template Known Secondary structure			T	T	S	S	B							B		S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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