Job Description Q47005 Confidence 74.95% Date Thu Jan 5 12:36:08 GMT 2012 Rank 246 Aligned Residues 212 % Identity 11% Template d1sbpa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.70

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		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.						120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																													.	.	.	.	.																						.																							.	.	.	.
Query SS confidence																													.	.	.	.	.																						.																							.	.	.	.
Query Sequence		V	S	I	G	F	A	P	G	T	A	A	S	S	I	T	M	P	L	L	Q	A	V	R	A	E	F	P	.	.	.	.	.	E	I	V	I	Y	L	H	E	N	S	G	A	V	L	N	E	K	L	I	N	H	.	Q	L	D	M	A	V	I	Y	E	H	S	P	V	A	G	V	S	S	Q	A	L	L	.	.	.	.
Query Conservation																													.	.	.	.	.																						.																							.	.	.	.
Alig confidence																													.	.	.	.	.																						.																							.	.	.	.
Template Conservation
Template Sequence		I	Q	L	L	N	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	E	T	G	D	N	V	V	I	D	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	T	V	T	L	A	L	A	Y	D	V	N	A	I	A	E	R	G	R	I	D	K	N	W
Template Known Secondary structure										S	T	T																				S										S											T	T				S					S	S										T	T	S	S		T	T	G
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
													163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.																						210
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	K	E	D	L	F	L	V	G	T	Q	D	C	P	G	Q	S	V	D	V	N	A	I	A	Q	M	N	L	F	L	P	S	D	Y	S	A	I	R	L	R	V	D	E	A	F	S	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	R	L	P	D	D	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	N	N	N	D	Q	A	K	A	E	D	F	V	K	A	L
Template Known Secondary structure		G	G	G	S						S			B								T	T		T	T				S	G	G	G	G	G	S	T	T								T	T	T																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.					.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																								.																				.	.																					.	.	.	.
Query SS confidence																								.																				.	.																					.	.	.	.
Query Sequence		L	T	A	K	V	I	G	E	I	E	S	I	A	T	L	T	A	A	I	A	S	G	.	M	G	V	A	V	L	P	E	S	A	A	R	S	L	C	G	A	V	N	.	.	G	W	M	S	R	I	T	T	P	S	M	S	L	S	L	S	L	N	L	P	.	.	.	.	A	R	A	N	L	S	P	Q	A	Q	A	V
Query Conservation																								.																				.	.																					.	.	.	.
Alig confidence																								.																				.	.																					.	.	.	.
Template Conservation
Template Sequence		F	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	T	N	E	L	G	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V	V	D	K	V	V	E	K	K	D	T	K	A	V	A	E	A	Y
Template Known Secondary structure				T						S	S										T	S				S															T	T	T	T	T	T							S					B															T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	L	L	M	S	V	I	S	S	P	V	M	E	K	R	Q	W	Q	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	F	Y	R	P	R
Template Known Secondary structure				G	G	G	S										T	T				S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions