Job Description Q47005 Confidence 91.00% Date Thu Jan 5 12:36:08 GMT 2012 Rank 193 Aligned Residues 89 % Identity 10% Template d1ku9a_ SCOP info DNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain DNA-binding protein Mj223 Resolution 2.80

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.				.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.					.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																		.	.	.																																	.	.	.	.														.	.
Query SS confidence																		.	.	.																																	.	.	.	.														.	.
Query Sequence		M	N	F	R	R	L	K	Y	F	V	K	I	V	D	I	G	.	.	.	S	L	T	Q	A	A	E	V	L	H	I	A	Q	P	A	L	S	Q	Q	V	A	T	L	E	G	E	L	N	Q	Q	L	L	.	.	.	.	I	R	T	K	R	G	V	T	P	T	D	A	G	.	.	K	I	L	Y	T	H	A	R	A	I
Query Conservation																		.	.	.																																	.	.	.	.														.	.
Alig confidence																		.	.	.																																	.	.	.	.														.	.
Template Conservation
Template Sequence		L	N	K	S	V	G	A	V	Y	A	I	L	Y	L	S	D	K	P	L	T	I	S	D	I	X	E	E	L	K	I	S	K	G	N	V	S	X	S	L	K	K	L	E	E	L	G	F	V	R	K	V	W	I	K	G	E	R	K	N	Y	Y	E	A	V	D	G	F	S	S	I	K	D	I	A	K	R	K	H	D	L
Template Known Secondary structure																	S	S												T																T	T	S							T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	Q	C	E	Q	A	Q	L	A	V	H	N	V	G	Q	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	K	T	Y	E	D	L	K	K	L	E	E	K	C	N	E	E
Template Known Secondary structure																S		T	T
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions